HsaINT0114909 @ hg19
Intron Retention
Gene
ENSG00000234876 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:7884]
Coordinates
chr6:32180251-32180688:-
Coord C1 exon
chr6:32180601-32180688
Coord A exon
chr6:32180405-32180600
Coord C2 exon
chr6:32180251-32180404
Length
196 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CGCTCCCTCCCACCCCTCAGACT
3' ss Score
8.14
Exon sequences
Seq C1 exon
CCCCTGTAGGAATAGGGCAACCTGCCAGGACAGCCCTCAGGGTCCCCGCTGCCTCTGCCCCACTGGCTACACCGGAGGCAGCTGCCAG
Seq A exon
GTGAGGGCCATTGAAGTCAGGCGTGCTGAGGAGGGAAGTGGCTGGGAGGGAAACCAGGGAGGGTCACCTGGTCCCAGGCCATTCAGGAGAAGGTTTTTGAAGTAAGGGATTTCGAGGAGCTGGAGTGGGCAGAGGACCATCTCTGGGCTGAGAATCTGATGCTATGTCCTGCCTCACGCTCCCTCCCACCCCTCAG
Seq C2 exon
ACTCTGATGGACTTATGTGCCCAGAAGCCCTGCCCACGCAATTCCCACTGCCTCCAGACTGGGCCCTCCTTCCACTGCTTGTGCCTCCAGGGATGGACCGGGCCTCTCTGCAACCTTCCACTGTCCTCCTGCCAGAAGGCTGCACTGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234876-NOTCH4:NM_004557:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTAGGAATAGGGCAAC
R:
CTTGGCTCAGTGCAGCCTTC
Band lengths:
241-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)