HsaINT0115660 @ hg19
Intron Retention
Gene
ENSG00000119508 | NR4A3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:HGNC Symbol;Acc:7982]
Coordinates
chr9:102584137-102588108:+
Coord C1 exon
chr9:102584137-102584689
Coord A exon
chr9:102584690-102587940
Coord C2 exon
chr9:102587941-102588108
Length
3251 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGT
5' ss Score
8.4
3' ss Seq
CTCTTTCACCTTGCCTGTAGAGC
3' ss Score
8.32
Exon sequences
Seq C1 exon
ATAAATGACGTGCCGAGAGAGCGAGCGAACGCGCAGCCGGGAGAGCGGAGTCTCCTGCCTCCCGCCCCCCACCCCTCCAGCTCCTGCTCCTCCTCCGCTCCCCATACACAGACGCGCTCACACCCGCTCCCTCACTCGCACACACAGACACAAGCGCGCACACAGGCTCCGCACACACACTTCGCTCTCCCGCGCGCTCACACCCCTCTTGCCCTGAGCCCTTGCCGGTGCAGCGCGGCGCCGCAGCTGGACGCCCCTCCCGGGCTCACTTTGCAACGCTGACGGTGCCGGCAGTGGCCGTGGAGGTGGGAACAGCGGCGGCATCCTCCCCCCTGGTCACAGCCCAAGCCAGGACGCCCGCGGAACCTCTCGGCTGTGCTCTCCCATGAGTCGGGATCGCAGCATCCCCCACCAGCCGCTCACCGCCTCCGGGAGCCGCTGGGCTTGTACACCGCAGCCCTTCCGGGACAGCAGCTGTGACTCCCCCCCAGTGCAGATTTCGGGACAGCTCTCTAGAAACTCGCTCTAAAGACGGAACCGCCACAGCACTCAA
Seq A exon
GTACGTATGAGATTCGCCCAGTTAATAAGGGGACTTGCTAAAAAAGTTGGCTTGCTGGGAAGCGTCGCTCCTGAAATTGACAACTTTGAGTGTGGGGTTCCCTCCCCTGACCTTGCCGCCCGGCTCCGGCTTTGCTAGCCCAGCGGCCCGTAGGTTCTGATCTGAAACTTTTCCCCTGTAGTGGGCCCGCGGGGATCTCTGGAGCTCGTGGGATTCCTCCCCCCACTCGAAGAGGCGAAAAGCCTCTAACAAAGAGGAGGACCGGGATTTGTGCTATAGCGGCTCCAGCGATGTAATTCAGGGTATTTCGGCTCTAGTTGTCATGGTAATGATGCTCTCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCAGGGAGTTGCAGCTCCGGTGATGAACGGCAGTAATTTTCCTGCCTTTTAAGTAGGATTGAAAATAGGAGCTCTGGTGGGTCCAAGTAAATGTTGCTAATGGTGGCACCGAGCTGGTTCTCTGGAAGGAAGCTTAGGAGGGAAGGGCCTAGGCAGCGACGGCCAGAGTTTGCAGACGCACTCGGAGGACCTCAGGAAAGAGGGCGTAATTGTAGGAATGTGGCTTATTGTATTGAAATGAGCCTGGGGTTCCACTAGGCACGTCTGCCTGTCGTCGCTGACATGCCGGTTTACACTTTTCCCTTAGGAGGTAAATCGGGTGTAATTGGCGACTCCCGCACACTGACACGTGTGGGGACGGTGTCCCTCTCCTCTGGACGTTGGCTCGGTGTGGGAAAGGCATGCTTTTTCACGGACAGAACTCGCGCTTTTGGAGAAGTTGCTCCGAGTGTTTTACTCTTAGTAGAAATGAAAGTTCTCGGTGGTGAGACGAGAGCGGTCATGCGAGCGCAGCCTGCGGAGACTGACTTCCAAAGGCACCTCTCCAACCTGTTGGAAGCCTCGGGGCAGTGGTGAGGAAGAACGCATTTGTCCCTTGATTTCCAAAAACGTTCTTGGAGATTGCCTTTTATTTATTTATGCGTCCGGATTCTCCAGAGGGAAGAGCTGCGAGGAGTTAGTAATCAGAAATGTCGGGCTGTGATCCCAGGGCCTTGTGGTGCTGGGAGAGAAGAACAGGGAGCCGTCATTCCATCGCGAGTCCAGTGCCGGATCTCCTTTTCCCACGACCGGGAAATATTTTATAGAATCAAGTTAGGGAAAGAAAAAGCTGCCTAACGTGGCTGATGGGCACAATGAATGAAGTTACTTTATTCGAGTTATTTTCGCTGAACAAGATGCTCGCAGAGTTAGTATCAAAGCCTCCTTAGGCCACAGCAACCTCCACGTCCGCTCCGCCCCCCACCCCCCGGCACCCATCCACCCCTTTGCCTGGGACCGTGCGCTCACAGAAATTCTTCCCCGCGGTTTGTCTAGTCTCCCTCGGTCTTTCTGAGAATCTCAGTCTTTCCCTTTCTGTCAGTCTCTCCCTCGCTCCTCTTGCCCCCGCCCAACCTCCGCCCCCGCTCCCCAGGGTTGGAAACTCCGCAGAGGAGCCCCGGTCACAATGGTGCGTTTCACGGTTTCCTCCACACACTTCACCACCGGGAGGGGAACACGGGGGTGTTCCTTTCGTCTGCCCACGAGAAAGAAAGGGGCTTTGACAGAGGTAGTTATTTCTTCCTAATTTACAACCCCAAGGCTCTGTGCTCCCGGCCCCGGCGGCCGCAAGCAGGAGCGGCGGAACGTGTTTCCAGGCACTGAGGCTTTGCCTAGGTAACCGGCCGCTTGTGGGGTGGAGAGAGCGGCGGGGCGCTGGGCTGGGCTGGAGGAAAGGCTGTGTGGGTCCCTCCCGCGAACGCTGGGCGCTCGAGGGGAACTCCTTCGTTGGGGAGAGGCGGTCCCCGCCCACCCGAGTTCTGAGGCCTCCTCTCAGAGAACGACTCCGCTTGAAAGGCCCTCAGGGAATGCGGGACGGGAATGCGGGCACCCACTGAAGGGGCGGGTGGGGGATTGCTGGAGACCCCCATTGAAGATGCGGGGAGACGGGAAGCACGTGCTACAGCCGTGGGAAGATCCGCTTCTACCCGCGCTACATCGAGCGCAAGCTTTCCGTCCGAGCAGCTCCAGCTGGGGCTGGGGGTGGCAAGGGAATCCCCCATTTCCTGGTCGTCGAGGGTTTCCTGGACCTGGGAGCCCCGAGTCCCTTTCTCTCTTCCTGCAGGCAAGCCCCGGGCTCAGGGGCGCCAGGAGATGACCCTCGTGGCCCCGCGCACCTCGGAGGTTTTTGGTTTGGTTTGATTTGGGGTTTTTCGGTCCCTGTTCCCACTCTTCGAGCTGCGCCCACCCCGGGCAAAGGGGGCGCTATAGGCCGGAGTTTGGGCACCCAGTTCCTTCCCTGAGGCCTGCTGAGCTGCGCTTTCAGCTACAAAGTTTCGCTGAGGCTGTGGGCTGAGACGCTGGTCCCGGAGCTGCGCTCGGCGCCCTCAGGAATGTGCCCCCGCTAGGCCGCTGGGTGGCCAGGAGCCTCCAAGCCGCCCACCCTCGAAGACACCGCCCTCTGGGTGCAGGGGACCTGCCTCCGCTCGTCCCATCAGCCGCTAACGCCGTCCGCTTCGTCCCCTTGCTTCCAGCGCCAGCCTTCTCATCGCTGTGCCCTTTTGTTTGCTTGACCCCTGGCCCTCGAAACTCGCGGCTAATAGAAGCGAAGCTCCATTAGCATTTAGAATGAAAAGCGCAGACTTTCTTAATTCCTCGGGGCATTCATGCATTCGTTCCGGACCTTGTGCATTTCCTATGCAACGTGTAAAATTTGTATTTGAGGGGTGGGGGCGGGCGGAGCTGGAAAATGGCTTTTTTCCGCTGGTGAACACTCACTGACCCCCCGTATTCGGGCGGAGCTCGTTCCTCAAGTGTTCTGCTTTCTTTGGTTTTCCTGACTTCGTAAGCTCGGAATCAATTGTGGGGGCAGAGAGATCAATTTCTGGGCAATAACAGGCTGCGCGTTTTTTTTTTAGCCTCGGTTTTGGTGCCACAAAACGGTGGTAGGCGCAGTGGGTTCCAACAACCTTTCCTCGGCTTCCCCGAGGCCGTGTGATGCTTCTTGCCCAGGGGGACTCCTGTACCATTAATCACCCTTAATTTTACGATAATTCTTTGTAATTAATGTAACATTTCTAGAGGTTGCCAACCAATTCCCCCAGTCCCCAATGCGCCCAGCCCGGGCCGTAGTGACCCATCCTGGTCTCACTGTGACCTATGTCCTCTTTCACCTTGCCTGTAG
Seq C2 exon
AGCCCACTGCGGAAGAGGGCAGCCCGGCAAGCCCGGGCCCTGAGCCTGGACCCTTAGCGGTGCCGGGCAGCACTGCCGGCGCTTCGCCTCGCCGGACGTCCGCTCCTCCTACACTCTCAGCCTCCGCTGGAGAGACCCCCAGCCCCACCATTCAGCGCGCAAGATACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119508-NR4A3:NM_006981:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)