HsaINT0115662 @ hg38
Intron Retention
Gene
ENSG00000119508 | NR4A3
Description
nuclear receptor subfamily 4 group A member 3 [Source:HGNC Symbol;Acc:HGNC:7982]
Coordinates
chr9:99825659-99828993:+
Coord C1 exon
chr9:99825659-99825832
Coord A exon
chr9:99825833-99828040
Coord C2 exon
chr9:99828041-99828993
Length
2208 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCTTTTCTCTGTCCCTGCAGATA
3' ss Score
13.88
Exon sequences
Seq C1 exon
AGCCCACTGCGGAAGAGGGCAGCCCGGCAAGCCCGGGCCCTGAGCCTGGACCCTTAGCGGTGCCGGGCAGCACTGCCGGCGCTTCGCCTCGCCGGACGTCCGCTCCTCCTACACTCTCAGCCTCCGCTGGAGAGACCCCCAGCCCCACCATTCAGCGCGCAAGATACCCTCCAG
Seq A exon
GTAGGTCCGAAGGCAAGACCCTTTTCTCCTCCCTGGCTGAGGGAAGTGGGTGGGGGAACCACACACTCGGCGGGCAGCGTGGTCGACCTGCCCAGTGCCAGGACAGTGACTGCTGGCCGCGAATTTCACAACACAGGTGGCTTCCTCACAGGAAGCTCCTCTGTATACCACACCCTGTTGCTACTGAGTGGAGCAGCCAAATTAAATTAAGCTTGCATTGCTCAAAATTAATTTTCCTAAGAGAAATACAAATACACCAATAGATTAGGGTATTTTATACATTTTTAATTTCATTTTTGCTCTTCTTTTATAGCCAGTGTGCACATGTAAGAGTTATGGAATCACTTAGAGCAATACTGAGCATTTTCATTTATATAAAACCCAAATCATTTGGGTGCAGAAGTTTGGATGATTGAAGCTCAGAGGGAAGGAGAAAAGCATTTGAGATGAAAACCAAAGAGTAAATTTGAGTTTGGCAAAAGAACAGATTGCACTTTTGGTTTGTACCACCTCTTTACAAATTTGTTAAAGGAATACTAGGTGCCAAGCCTGTGTGGGCACCATAGATAATGCAGATAAATAGAATACAATCCCAGCAAGCTCATCTTCTAGCTAGAAACCTCAGAAAGACACAAATAAGAGCAGTAAAAAGGGATTGGCCGGAAAGAATGACAGAAAAGAGTAATGGAGAAATCCTAGAGGTGCTGAAGGGAGAAGGAGAATAGATCAAAGATCAGGCAGTGTTCTTTCTTTTAAATGATTAGCCTTTCATTTCATCCCAACAACTGGACAGCAAGATAAGTAACTGGACTTCAAACTAGTGAGTGTATTTTTAAGGCCCTGCTTGTTAAAGAAAGGCTTGAACTGGCCTCTCCTCATCACTGCTTCTTCCAACAGGCCCTCATCACCTTTTTTCAAGTCAAGATTTCATCCCATACATGCATGACTCAATCAGATTTGGAAATGTGGGTAAGAGAAAGATGTCAAAGGAAATGTGAAGTATTCACTTCTCTATTAGTCACACCTTTTACACCATAGACTCCAAAGAGGCGTTAAGCACCTGGTTTTCCTTTGGCTCAGAAAAACCAACCACCAAAAACCGCCGTTTTTTACCATTTATATTTAGCCATAAAGAAAGAAAAATAATTAGATAAATCATCCACTACATCCAATAATTCTCAGCGCCTTCTCACTCAGTTCAGCCTCTCTGAACAATAGTAAGCACCCTGGATACCAGCCACTTTGGGGGCAACATAGTCAAACTGGCAGAGAAATCAAGTCTATTGAGAAACTGCTTTTTTTCATGGGTACTAATTCTAGTGTCATAAGGAAATACCTATACTAACTTGCCTATTATGATAGTTATAAACTGTTATCACAAAACAGTCACTGATATGTTTTATTAGTTAGAATTGGGATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATGGGTGGGTGTTTTGTTGCAGCTGCTGATCTTTTTCTTTGCAGATGGTACAAACTCTCCCGAGTCAATTTCCTGGGCCTATGTCCCCACCTAGCTGACTGAAGTTATCAACAGGGGTCCAGTTTGTGCAGGCTGCTAGCCCTATTGGAAGAGTGGGGATGAGGTGGGAGAAAGCAACCACAACGTGTGTGGGCAACCTCAATTGGCACTCATAAAATGTTAGAATGTCAACTCTCTCCCTTGGCCACTAAATCTCTCACAGGGTAGTTTTTCTTGCCTAACTCAGGTTTACAAATCAATGTGTATGCCTTGGGGGACCAATGGCCTCTTTCCTCCCAAATAAACCACTGGCTTTCTCTTTGTCCCCCTAGGTTATAGCTGAGGAGCCCACTCCAATTAGTTTATAGGATTCAAAGCCTCTTTTTAAAAACATCTCTGAGCTTATGAGGAAAGACTTCAAGTTTCCCAAATCTAGTGGAGGACAGGGCAAGGGAGGAAAGATAGGTACAGGAGTCCACAGGAGGCCAGGTTTTGGCACCCCTTTGTCAGGAATTCAGCTTCCTTACTAGGGATGAAGAAAATAAGTGTGGGGCTTTGTGTCTATGCTACCAGAAGGAGGAGAGGATGACACTTCCTCTCTGTTTCCCAGATTAGAGAACAGTGAACCCAATGCTGCCTGTTGGCTAGAAAACAAGTGTTAACTTGCTTCTGAGAGACCCTTTTCTCTGTCCCTGCAG
Seq C2 exon
ATATGCCCTGCGTCCAAGCCCAATATAGCCCTTCCCCTCCAGGTTCCAGTTATGCGGCGCAGACATACAGCTCGGAATACACCACGGAGATCATGAACCCCGACTACACCAAGCTGACCATGGACCTTGGCAGCACTGAGATCACGGCTACAGCCACCACGTCCCTGCCCAGCATCAGTACCTTCGTGGAGGGCTACTCGAGCAACTACGAACTCAAGCCTTCCTGCGTGTACCAAATGCAGCGGCCCTTGATCAAAGTGGAGGAGGGGCGGGCGCCCAGCTACCATCACCATCACCACCACCACCACCACCACCACCACCATCACCAGCAGCAGCATCAGCAGCCATCCATTCCTCCAGCCTCCAGCCCGGAGGACGAGGTGCTGCCCAGCACCTCCATGTACTTCAAGCAGTCCCCACCGTCCACCCCCACCACGCCGGCCTTCCCCCCGCAGGCGGGGGCGTTATGGGACGAGGCACTGCCCTCGGCGCCCGGCTGCATCGCACCCGGCCCGCTGCTGGACCCGCCGATGAAGGCGGTCCCCACGGTGGCCGGCGCGCGCTTCCCGCTCTTCCACTTCAAGCCCTCGCCGCCGCATCCCCCCGCGCCCAGCCCGGCCGGCGGCCACCACCTCGGCTACGACCCGACGGCCGCTGCCGCGCTCAGCCTGCCGCTGGGAGCCGCAGCCGCCGCGGGCAGCCAGGCCGCCGCGCTTGAGAGCCACCCGTACGGGCTGCCGCTGGCCAAGAGGGCGGCCCCGCTGGCCTTCCCGCCTCTCGGCCTCACGCCCTCCCCTACCGCGTCCAGCCTGCTGGGCGAGAGTCCCAGCCTGCCGTCGCCGCCCAGCAGGAGCTCGTCGTCTGGCGAGGGCACGTGTGCCGTGTGCGGGGACAACGCCGCCTGCCAGCACTACGGCGTGCGAACCTGCGAGGGCTGCAAGGGCTTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119508:ENST00000395097:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.551
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0253517=Zip=WD(100=35.8),PF0010513=zf-C4=PU(38.6=8.5)
Main Inclusion Isoform:
ENST00000618101fB21363
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development