HsaINT0117075 @ hg38
Intron Retention
Gene
ENSG00000126883 | NUP214
Description
nucleoporin 214 [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr9:131139281-131140710:+
Coord C1 exon
chr9:131139281-131139407
Coord A exon
chr9:131139408-131140548
Coord C2 exon
chr9:131140549-131140710
Length
1141 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TTTGTTTTCTTTTTTAACAGGTG
3' ss Score
12
Exon sequences
Seq C1 exon
ATTAATTGGGAATCTTGGCTACTGGAGGATTCTAGTCGAGCTGAATTGCCTGTGACAGACAAGAGTGATGACTCCTTGCCCATGGGAGTTGTCGTAGACTATACAAACCAAGTGGAAATCACCATCA
Seq A exon
GTAAGTGTAGCCTGGTAGTTAGTGCAGAAATAGTCTTCTTTCTAGTTAGGGTTAATATTGAAACACCAGTTACATGTTACTGACAGAGTCTACTCTGCTGGGCACTTGTAGCTTCTGGCAGCACATTTCTCCCTGAAGAGTGATAACAGGCTGCGTTGTGACAACACTAAACTGATTTGAATGGATGTTCGTTGATGAGACCAAGGCCAAACACTGTATGTATGTGTGGGTGCATGTTTGCACACTTGCACATGTCTGGGTGTACTTTAGAATCTGGTTGAAATATAGAACATCAGGATTTTATGGCTTGGTTTCTTTGTCCAATCCAATTCCCTGGTGACCTCCCAAAGAAGCAATACCCGAATCTGGTACTGCACACAAGTACTTGGTTTGAAGGCAAGGATTAGAAAATAGAGACCTCAGGCCCATGGTTTCCAAATAGGGCCTAGATATGTGTTTTGAATAGATCTTCCCTGCAGTAGCTTGGCTATACTGTAGTCATTGAAATGTAAAAGTGCCACAAAAGAAACAGTCTTTGCCATCTGGTACTTAAGTTTAGAGAGGTGTCCCCGTCAGGCACCATTAAGTTGCTTGCTCCTTCCCTGGTTAGGCAGGAGTATTTGTTCTGATAAGCTCATTTGCTCTGATTCTCTTGAAGCCTTAACTGATAAAATACATACTTGTCATTCAGCTGTGAATGAGGATAAAGTGGTTTGACTCATCTTTCTGTGTCCTACTGTCCATTCCAAAGAGTCTAGTCTCATTTTCCTACTAACCTAAGTACTTCTTAGATATTCTTCTCTTGGTCAGGGGAATGCCAAGCCTACCTCCACTGAGGTACACAAGCCACTGAGACACTCATAAAAACTGAGGGACCTTTGGGAGAGTCAGAGCTACTGCGGGACTGATGGAGCTTCTAGGCAGGGCCCAGCAGGGTGGTGGCGATCTGATAGCGGCAGGAACTCTCTTTAAATAGCTGGTGCACGAAAGGCTGTTCAGATATAAAATCAGAACAAACTAACTTGAGCTGCTATTCAGATGAGTCCCTTAAACCCTCTTCATGTTGAGGGCAGTCTTTGCCTTCTGGGCTCAGGCCCTTAAATTCACTTGGTTTTTTTATTTTTGTTTTCTTTTTTAACAG
Seq C2 exon
GTGATGAAAAGACTCTTCCTCCTGCTCCAGTTCTCATGTTACTTTCAACAGATGGTGTGCTTTGTCCATTTTATATGATTAATCAAAATCCTGGGGTTAAGTCTCTCATCAAAACACCAGAGCGACTTTCATTAGAAGGAGAGCGACAGCCCAAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126883:ENST00000359428:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=NA C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGGAATCTTGGCTACTGGA
R:
CTGGTGACTTGGGCTGTCG
Band lengths:
286-1427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development