HsaINT0117076 @ hg38
Intron Retention
Gene
ENSG00000126883 | NUP214
Description
nucleoporin 214 [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr9:131140549-131144754:+
Coord C1 exon
chr9:131140549-131140710
Coord A exon
chr9:131140711-131144279
Coord C2 exon
chr9:131144280-131144754
Length
3569 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCCTTTTTTTGTCACTGCAGGAA
3' ss Score
10.14
Exon sequences
Seq C1 exon
GTGATGAAAAGACTCTTCCTCCTGCTCCAGTTCTCATGTTACTTTCAACAGATGGTGTGCTTTGTCCATTTTATATGATTAATCAAAATCCTGGGGTTAAGTCTCTCATCAAAACACCAGAGCGACTTTCATTAGAAGGAGAGCGACAGCCCAAGTCACCAG
Seq A exon
GTATGTGCCTCTGCCTGCTTTATCAGTAAGGGAATACCATGGGCTTGCACAAGAGTATTTCCAAGAATGAACATGGTGTGAAGACACATAGTGATTATCTTTACCAGCCTGGTCTGTCTTAGGAAGGCACACACTAATCTTTTTTTTAAACATGCATGTACATATTTGCCTTCCCCTACCCTCAAGCTTTATTCTGCAGCCATTACTTTACTTCGGAGATGAAGGAAGGTCAACCAGATGATTTGCATCCAGTCGTTTACCAACAGTTTTCTAAGACCCTATATTATGTGATGTGCATCCAAAAGACATTGTGCTTAATCATGGGGGTTGGTTAAAGAAATGATTGTATAGTCTTACAGTGAAATGCCATGTACCAATTATAAATGTTATATTTATTGACAGGGAAGGAGTGAGTGGAATACATCACCAAAAAAAAAAAAACCACTATTCTTTGTGATCTTTTCTGTATGAGAAAAAACATATACATAGAAAAACAACTTGGAGATGGATTTAAAGTCTAAATGGTGGTTATTTCTGGGTGATGGGAACATGGAGATTTTTGTTTATATTTTCTTGACTTTTTTTCTCCTTTTTGAAACATTTCTTAAGTAATAGATGTTTATTGAAGGAAAATGAGAGCATGCAAAACAATGGCCACAGTCAACATTTTGGTACCTATCCTCCATGAAAATGAATGCACACATATAAATACTAGTCTGTATTTAAACAATTTTTACAGTGACATTTGTATCACTTGTGAAAAGAAACTTTTTTTTTTTTTTTTTTTTGTGGAGACAGGGTCTTACTCTGTTGCCTAGGTTGGAGTGCAGTGGCATGACCACAGCTCACTGTAGCCCTAATCTCCCAGGCTCAGGCAGTCACCTAAGCCTCCCAAGTAGCTGGAACTACAAGCATGCGCCACCATATGCAGCTATTTTTTAAATGTTTTGTAGAGATAGGGTCTTACTGTGTTGCTCAGGCTGGTCTCAAACACCTGGGCTCATGTGATTCTTCTGCTTCAGCCTCCCAAAGTGCTGGGATTATACGCATGATACACTGTGCATGACCAGAAAATATAAAACTTTTAAAAAGAGCATTGTTTCATATGTTGGAATTTGACTAATATTTCTCTTTTTGAATTCTGTGAGTATATAACTGATACAATTTTTTTCTTCTATTATGACCAGTTTCTTACCTAAGCAAAAATGTATGACCAGTTGGTTTGTATAAGGTTAGCAATAACTTAGGGGTATATTCTCTTCCTGCATCCCAGTGCACAGTGAGTTGTATATCACAAATAGAGCCACTCAGATACTTGGGCCCTAACAACTGGCAGCACTACCCCAAGTGATATACCAGATGGCTTGCAGAGTGTTGTATCAGGGTAGTCCATTATTCATAGTGTGTGTACTCTTTGTGTTGTTTTTTTTTCCTCCTTATTCAGCCATGAATAAGGGTACCATGAACTACCTATACCCAGCTGCCTGGTGTGTCTGTAATAAGCAGAGCAGCCTGTGAGATTAGGAGCCTCTGGGATGGGACGAGGTTTGTTTCTGAGCCTTTGCTACTAGCCCATTCAATGCTGGAGCACAATCAGAGGCCAGTTTTACTGTTAGCCTTTCCTAGAGAAACTCCCCTCTTCCTTCACAGTTGGTCCAGAGGTTATAGTTGTGTTCAGATGTGTAGAAGAGAGCCCCTGCGGGGAGAAAGTCCGTCCCATCAGCTAAGTCTAGCTAAAGCCTACTTCATGGGTTCAGAAGACATTAATGGTTCCACCTGTTTCTACACTGCAGTTCTAAGGATGCTGTATTGATCAGAAGTAGTAGTAGCATGATGGTTTTCCAATAATCAGTTCTGTTTTCAGTGGAAAAAATGCTTTTGATTTATTTAGGGTCTGGTATATATTTTTCATGTCAGTTTACCTAATATGCATGAAAGTGTTTTAACATCTATGTATGTCTTTACAGAAGTTAGTTGTAGCTGGTTCCATATCTATTGTATAAAGAAGTATTAACAGAATAGGTTTGCTTGCATTATTATACTTTCATCAATGTGACAGTTTACTTGGATTTTTGTTTTCAGAAAGTGGTATTTTCATACTTGTATCTAAGTATTACGTTGCATTAGACAAAGTGTCTTCCATGAAGATAAACTGCCATCTTAGCTAATTTGGAACAACCAAGTCCTATTAATATAAATAGAAAATATTGACACAAAGAATTCTTTTCTTATTTAGTTGGTTATTTAATTTAAAGATTAATATTTTTACCTTATGGAAAGTTTGGAAAATAGAAAAAAAAATTATTCATTTTTGAGACAGGGGTCTCACTCTGTTGTGCAGGCTGGAGTGTAGTGGCAGGATCTTGGCTCACTGCAGCCTCTGTCTCCCAAGTCCAAGCGATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACAAGCCATCACACCTGGCTGATTTTTGTATTTTTTTTGTAGCAACAGGGTCTCACTTTGTTCCCCAGGCTGGTCTCAAACTCCTGGACTCAAAGGGTCCTCCTGCTTTGCCCTCCCAAAGCTCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCTTCCATTGACTTTTTTTTTTCTTTTTAACCATTTGGATTGCATTAAATATCTTTTTCATTTTTTGCATTATGTTTGTAAGCTTTATTCTTAGAAGAGAAATTACTGGGTCTGTTTTTTACAGTTTTTTATACAATGCCAAAATGTTTTCTTAAAAAAAATACTAGTTACCTACCAGTGATAAAAAGTTTCAGGTTTGTTTTACCCATCCAAACATAAGGGGTTAGACATATTTAAATTCTTATAATTTAGAGGACAAATTAAAAATGTACCTTGTTTATATTTCTTTGATTAGAGAGATTGAATGTGTTTTCTTTATGTGAGTTAGTTTCCCTGTTTATTAGTCCTGAAATTTTAAAATCTCAATTTGTATGAGCTTTTTAAAAAATAGAAAACATCTTATTTGTCATTTGCTATGGATCTTTTTTTTTAGTTCATTACCATTTAGTTATTGTACCTGAGTAGCTATTTTTTACACAAATCTTAACCTTCTCCCTTTGCGATTGTTTTTTTTTTGGTCACTTCTAAATTTATCAAGGTGTTAGATTCTGAGACCTAACATATCTATCAATTTGCCTCCTTTGTTTTGAGATACCTGTATTTATGTGACTTTCTATGTGTATTTATCTGGAATTACTTTTAGTGAAATAAGGTGGAGGTCTGAATTAAAACTTTTTCCTGGTTGTTAATGAAATGTTGCAGTGACTGAACTGTTTTGTGTGCCATAGTAGCACTGAGAAGTCCATGAAGTCCAATTATTCTAATGTCTTTCCTTAGTTTTCCTTCAGTTTCATTTATCTCATGAGACCTGAAAACTCCAACATGAACTGTGTACCCATGTGTTCTTTTTGCTTCTTAAACTAGTAACATTTCTGGCTTTATTCTACCACAAATTCTTTTTCACTTGCTTTCTATTATGTGAACCTCCACTGTTACAGTGTTAACATTTTCCTTCCTTTTTTTGTCACTGCAG
Seq C2 exon
GAAGTACTCCCACTACCCCAACCTCCTCTCAAGCCCCACAGAAACTGGATGCTTCTGCAGCTGCAGCCCCTGCCTCTCTGCCACCTTCATCACCTGCTGCTCCCATTGCCACTTTTTCTTTGCTTCCTGCTGGTGGAGCCCCCACTGTGTTCTCCTTTGGTTCTTCATCTTTGAAGTCATCTGCTACGGTCACTGGGGAGCCCCCTTCATATTCCAGTGGCTCCGACAGCTCCAAAGCAGCCCCAGGCCCTGGCCCATCAACCTTCTCTTTTGTTCCCCCTTCTAAAGCCTCCCTAGCCCCCACCCCTGCAGCGTCTCCTGTGGCTCCATCAGCTGCTTCATTCTCCTTTGGATCATCTGGTTTTAAGCCTACCCTGGAAAGCACACCAGTGCCAAGTGTGTCTGCTCCAAATATAGCAATGAAGCCCTCCTTCCCACCCTCAACCTCTGCTGTCAAAGTCAACCTTAGTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126883:ENST00000359428:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.676
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development