HsaINT0117557 @ hg19
Intron Retention
Gene
ENSG00000122136 | OBP2A
Description
odorant binding protein 2A [Source:HGNC Symbol;Acc:23380]
Coordinates
chr9:138437985-138438757:+
Coord C1 exon
chr9:138437985-138438098
Coord A exon
chr9:138438099-138438623
Coord C2 exon
chr9:138438624-138438757
Length
525 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGC
5' ss Score
4.72
3' ss Seq
ACGGCCTTGGCCTGCTCCAGATC
3' ss Score
5.72
Exon sequences
Seq C1 exon
CGCCCAGTGACCTGCCGAGGTCGGCAGCACAGAGCTCTGGAGATGAAGACCCTGTTCCTGGGTGTCACGCTCGGCCTGGCCGCTGCCCTGTCCTTCACCCTGGAGGAGGAGGAT
Seq A exon
GTGAGCTGGGTTGGCGTGGGCGGATGGAGGAGCCAGGTGGACTCCTGGGCAGGGGGCAGTGCCAGGGGCCCTGCTTTAGGAGGTGTCACTGAAGGCTGGCTTCTGACCCCGTGCTCCCAGCCTGGGGTGGTGGTGGAGGGGTCCTATTGTTCCTCCAGCAGACACGGCCCCCCGAGGCCCAGGGCCGGAGCAGGCTCGGCTCAGGGGTTCCTGCTGCACTGACGCCTGAAGCCCGAAGGTCTCGCAGGGTTGGGCCCTGTGGAGGGAGGGCTCACCTGGTGCTGGGGCCCGGGGGTCCATGGGGTGCAGACATGCCCTCCTTCCACTGGGGGCTGGGAGCCCTGAGCAGGGGGCTGGCTCTAACTCACTCCAGCTGAGCTCTAACTAAGGTGCAGGAACCCAGCCTGCCTTTAGGGGTGGCAGCCGGGCACCATGGGTGTCTGGTTATAGCTGCAGGCCTGAGTGCCAGGGTCAGAGTAGAATCTGGGCCACCCATGGTGGGCTCACGGCCTTGGCCTGCTCCAG
Seq C2 exon
ATCACAGGGACCTGGTACGTGAAGGCCATGGTGGTCGATAAGGACTTTCCGGAGGACAGGAGGCCCAGGAAGGTGTCCCCAGTGAAGGTGACAGCCCTGGGCGGTGGGAACTTGGAAGCCACGTTCACCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122136-OBP2A:NM_014582:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006118=Lipocalin=PU(40.6=95.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTGACCTGCCGAGG
R:
ATGAAGGTGAACGTGGCTTCC
Band lengths:
246-771
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)