HsaINT0119109 @ hg38
Intron Retention
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr11:7703698-7704674:-
Coord C1 exon
chr11:7704565-7704674
Coord A exon
chr11:7703790-7704564
Coord C2 exon
chr11:7703698-7703789
Length
775 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTAAGGTATTTGCAATTTAGGTA
3' ss Score
5.35
Exon sequences
Seq C1 exon
CTCCCAGTTGTGGGCAGAGTCTGGTTAAGGTACAGCCTTGGAATTATTTTAACATTTTCAGTCGCATTCTTGGAGGAAGCCAAGTGGAGAAGGGTTCCTATCCCTGGCAG
Seq A exon
GTGAGTCTCAAGGACTTCTATGCATCAAGAACTGTGCTAGATATTATGGATATAGATATTTTTAAGGTTAAGTTTATATCTTTGAGGAGCCTACAGCCTAGTTGGGTTGAAAGACAGAATAGTCATCATGGCATGTGATGAATGTCATAAGAAAAAGTATTTACTTGTACATAGTAAGTCATTTTAGAATCAAATCAAGTATCACAAATAGGATAAGCAAAAATTAGAAAGTATATTGGAGAGGTAGGGTAAAGAATAGGCTTGAAGAAGCTATAGGGGTCAAATAGTTAAGAGTATGAGAAAAGTGGTAGATCCAAACCATTTCCCTAAGAGGCTTAGAGAAATAGGAGTATGTGTTGAAAGGCTCCCCAGCCCTCACCTTGCCTTTCTTCCAAACCTCTTCAGCTGGACTCTGCAATATCTTATACTATTTTACCTTCATTCACAGACACTGTTCATATTGTTAGAGCAACAGGTCTGCATCAACTGTGTTATAAAAATAAGTAAATACATCTCACCACTTCTAACTGCTACCTCTGTTGACACATACTTACAGCCAGTCATCTCAAATTAACTACCTCTCATCTAGACCAGGGTTGCCAGCACCACTCTTCTTTCTGAGCGGTAGTGTCTGGGCTTTATCTTTTCACAGTCCACGATTCTTGACATTTACGAGTGTGATATCTGAGTCTGGTTTTGAGAATAGGCTTCATCACCGTGTTTAGGGGGATCCCAGGGCATGAACTTGCTTTCATTTAAGGTATTTGCAATTTAG
Seq C2 exon
GTATCTCTGAAACAAAGGCAGAAGCATATTTGTGGAGGAAGCATCGTCTCACCACAGTGGGTGATCACGGCGGCTCACTGCATTGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378:ENST00000533663:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(5.8=37.8)
A:
NA
C2:
PF0008921=Trypsin=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGTGGGCAGAGTCTGGT
R:
CTGTTTGCAATGCAGTGAGCC
Band lengths:
198-973
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development