HsaINT0119413 @ hg38
Intron Retention
Gene
ENSG00000070756 | PABPC1
Description
poly(A) binding protein cytoplasmic 1 [Source:HGNC Symbol;Acc:HGNC:8554]
Coordinates
chr8:100706887-100709223:-
Coord C1 exon
chr8:100709133-100709223
Coord A exon
chr8:100706998-100709132
Coord C2 exon
chr8:100706887-100706997
Length
2135 bp
Sequences
Splice sites
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
3' ss Seq
TTCACATCTTTAAAATGCAGCAT
3' ss Score
5.55
Exon sequences
Seq C1 exon
ACTCAGAACCGTGCTGCATACTATCCTCCTAGCCAAATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATC
Seq A exon
GTAAGTCTTTTTTCTTTTAATTAAGGTTGGGGATTGAGTTAAAAATAACACATTGGGTAAATCAGCTCTTCTATGTCAATGTTAGGTTAACTATTGCATTTCACATAATTTGTGGTTATGGATGTTCATTTTTATAGCATTTAAAAGCAGTGCTAAGATAGTAATGTCTACAGTGGTTTGATTTCCCTTTATAAAAGTTTTGGGAATAGGTACAGCTCTTCATTTTTTATTTATTTATTTATTTATTTATTTTCGAGACAGAGTCTCGCTCTGTTGCCCCAGGCTCGAGTGCAGTGGCTCAGTTTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTTCTCCCTGCCTCAGCCTCTGGAGTAGCTGGGATTACAGGTGCCCGCCACCACGCCCAGCTAACTTACGCATTATTAGTAGAGATGGGGTTTGACCACGTTGGCCAGGGTTGTCTTGAGCTCCTGATCTCAGGTCATCTGCCCACCTCAGCCTCCTAAAGTGTTGAGAGTACAGGCGTGAGCCATGGCACCCAGCCAATTTCATATTTTGTCAGGCCACAGTTTTAAAGGTCTCGTTCCATTTAATCATGTATGAGAATCAGAGTCGTGGTATTTTATGTCTTGTCCTGTGGAACAGTATGTTATATTCCAAGAGCACTTAGAGTTTATTTTTTTAGACAGAGTCTCACTCTTTCTTCTAGTCTGGAGTGCAGTGGCATGGTCTTGGCTTACTGCAGCTTTCACCTCCCGGGTTCAGGTGATCCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACACGCCACCACGCCCAGCTAATTTTTTAAATTTTTTGTAGAGACGGGATTTTGCCCTGTTGGCCAGGCTGGGAGCACTTAGAATTTTATCATGATTATGTTTCAGGTATATTTATAAGTGTGGGCGGCAAACCACCCAGGTGCCAAGGCAAGAGACCGAGGACACGAGCTGTTCCAATATAATAAAATATAAAATAAGAATAGTTATACCAGATATAGATCTTAGATATGATTATATATGAATATCATTAATCATTAGTTTGTAGCAATTACTCTTTATTCCAATATCATAATAATCCTCACTCTATAATCATAACCTAGGAAAAACCAGGCCATACAGAGATAGGAGCTGAGGGGACATAGTGAGAAGTGACCAGAAGACAAGAGTGCGAGCCTTCTGTTATGCCCAGACAGGGCCACCAAAGGGCTCCTTGGTCTAGTGGTAACGCCAGCGTCTGGGAAGACGCCCGTTGCCAGGCGGACCGAGGTCTAGCAGTAGCGTAAGTGTCAAAGGAAAACACCCACTATTTAGCAGACCGGGAAAGGGAGTCTGCTTTTCCCCTGGGGAGTTTAGAGAAGACTGCTCCTCCACCTCTTGTGGAGGGCCTGACATCAGTCAGGCTTGCCTGCAATTATCCAGAGGCCTAACCGTCTCCCTATGGTGCTGTGCTTCAGTGGTCACGCTCCTAGTCTGCCTTCATGTTCCATCCTGTACACCTGGCTCTGCCTTCTAGATAGCAGTAGTAAATTAGTGAAAGTACTAAAAGTCTCTAATATGCAGAAACAATGGCGTAAGCTGTCTTTCTCTCTGTCTCCTCTCCCTCTCTGCCTCGGCTGCCAGGCGGGGAAGGGCCCCCTCTCCAGTGGACACGTAACCCACGTGACCTTACCTATCATTGGAGATGACTCACACTCTTTACCCTGCCCCTTGTGTTTTGTTTCCAATAAATAACAGTGCAGCCAGACATTCAGGGCCACTACTGGTCTCCGCGTCTTGGTGGTAGTGGTCCCCCGTGCCCAGCTGTCTTTTTTTTTTAAATCTCTGTGTCTCGTGTCTTTATTTCTGCACTCTCTCGTCGCTGCATACAGGGAGAAGCCCACCGACCCTGTGGGGCTGGTCGCTACATATAAGTACTCGTCCTTGTATGAATTAATGTTTTTACTTATTGATGCTCTGAGTCTGGGAAAATGGCAAGTGTTAAGACTCAGCTTTAAAAAGTTTTGTCACTTTTTAGTCTTTTATGCAAACCTCAGATCGAAGAAGACAGCATAAACACTTTTCACTCAGTAAGTTTTCCCAGTTAATGTATATTCACATCTTTAAAATGCAG
Seq C2 exon
CATTCCAAAATATGCCCGGTGCTATCCGCCCAGCTGCTCCTAGACCACCATTTAGTACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCAACACAGCGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070756:ENST00000318607:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.645 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development