HsaINT0120747 @ hg19
Intron Retention
Gene
ENSG00000106331 | PAX4
Description
paired box 4 [Source:HGNC Symbol;Acc:8618]
Coordinates
chr7:127251999-127253145:-
Coord C1 exon
chr7:127253076-127253145
Coord A exon
chr7:127252055-127253075
Coord C2 exon
chr7:127251999-127252054
Length
1021 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
GATTCACTCTCATTTTATAGGTG
3' ss Score
10.09
Exon sequences
Seq C1 exon
GTCTGGTTTTCCAACAGAAGAGCCAAATGGCGTCGGCAAGAGAAGCTCAAGTGGGAAATGCAGCTGCCAG
Seq A exon
GTGATTTCTCTGCACCATCATCCATCTGCCCGCTCAGTCATCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCTCCATTCGTCCATCCATTTATCCATCCACCCATGTATCCATCCATCCATTCATCCATTCATCTATCCATCCATCCATTCATCCATTCATCATCCACCCACCACACCCACCCATCCACCCAGCTACCCATTTATCCACCCATCTATCCATGCATCAATCCATCCATCCTCCATTCATCCATCCATTTATCCATCCACCCATGTATCCATCCATCCATTCATCCATTCATCTATCCATCCATCCATTCATCCAGGCATCATCCACCCACCACACCCACCCATCCACCCAGCTACCCATTTATCCACCCATCTATCCATGCATCCATCTCTCCATCCATCCATTTATCCATCCACCCATCTATCCATCCATCCAGCCAGCCAGTCACCCACCCATCTGCTCACCCACCTATCTACCTATCCATTTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCACCCATTCATTCATGCATCCATCCATGCATCTGCTCATGCATTCATCCATCCATCCACCCATGCATCCGCCCATGCATCCATCCAGCCACCCATGCACCCATGCATCCATCCATCCATCCATCTTTCCATTAATCTGTGCATCCATCCACCCATCCATCCAATATTTACTCAGCATCTCCCCAGTGCCAGACCCTGTGCTAGATGCTGGGCACACACAGTCCCGGATCTTAAGGCTGCACTGTCCCCAGTACCATCACTGGAATTTAATCATTCTTCTCCAGTTTCCCAAGGACCTGTCTTGGGGAAGAGGACAGTTTTGGGTTAAAATATCCATCTCTTCACACCCCTGCAAGAAGTGGCTGACTTTCCTAGAACCTCTTTGTATCCAACCTTCCTGCCTCTCACCACACTCCTCCCGTCCCTAACCCCAATTCCTCCTTCTGAGTGGATTCACTCTCATTTTATAG
Seq C2 exon
GTGCTTCCCAGGGGCTGACTGTACCAAGGGTTGCCCCAGGAATCATCTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106331-PAX4:NM_006193:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (disopred):
C1=0.896 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(19.3=45.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)