HsaINT0121847 @ hg38
Intron Retention
Gene
ENSG00000112541 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr6:165413501-165416281:-
Coord C1 exon
chr6:165416189-165416281
Coord A exon
chr6:165413688-165416188
Coord C2 exon
chr6:165413501-165413687
Length
2501 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTGGTTCTGTCACCCCACAGAGA
3' ss Score
9.57
Exon sequences
Seq C1 exon
ATTTTCAATTGAGAAAGGAATTGCTGGCCAAGTAGCAAGAACAGGGGAAGTCCTGAACATTCCAGATGCCTATGCAGACCCACGCTTTAACAG
Seq A exon
GTAAGAAATAGCTGATGTCGACACTCCATTGATTTCTTCTGTGATGTCCCACTCAGCTGAAACCTCTTCCGTGGAGCCTGAGTTCTCCACGTCCCAATTCAGTTCTTTCTTCCTTAGTTTTCTTCTCTGAACCAACTCTGCTATCAATAGTCAGTATATTCAGATATTTATAAAATGATGGATTCTAATCCACTAATGTATCATGATATCTAGATACAGGAGTTTAGAATGTTATAAAAACAACTGATAGGCGGTAGTTTTAATTTATAGAGCTACTGTGGGATTTTTTTTCCATTATAGTGTCATGATTTTGTAACAAACATGTTCTCCGTCAAATCATATGCTCAAAGGCTGCAACACATAGTAAGAAATTTGCATGCTTTTGAGATGAGTAGGTCTAGCTTTGAAGCACGGTTCTGTCATTTCTTAGCTCTCAACTGACCTAGCATAAGTTACTTAATCTCTCTGAGCCTCAGTTTCCTCATCTTTAAGATGAGTATGATAATGCCAATTTTGTTGCTGTTGTTTTAAGATCACAGATAATATTCATGAAAGGTCTGGAAAATTTACCTGACCCAAAGTAACTAAATAAGTTACATCTTTTATTGGATATTATTAAAGATGGATATTAGGAAGGCTTATAAAGATTTTTTGTTTTGTTTTGACTTTCTTTGGAGAGTTGCAAACCCAATTATGTAATTTGATTTTAATAAATCGCTAGAAATGGAAAGTCTCAGGATTGATGCTGTGACTGTTAGAGAATAATATTTACAGTAGTTTGACAGCAGTGTTTAGTTAATTCCAACTCGTGGTTTACTTTAAGAGACAAATAACATAAGCAATAGGAAGTTTATTCAGTTATTTGATCAATTGATGTCAAATATACACAACTCCTATAAAAACATAGGAATATTCTAGTAATGTATATTGTCAATAAATTAAGGGTACACTGAAAGTTTTTTTCCAAAAGTCCAAACTCATCATTTAGTACTTAAAAATTAAATATATTTGCTCATCCTTATGTCCAATCTTTATGTAAAAATGTATGAGTCAGACTATTAAGAAAATGAAAATGCAAGCACCAGATTAGGAGAAAATATTTGTAAAACATGTATCTGACAAAATACTTATATCTAATATATAAAAACTCTTCCAGCATAACAATGAGAAGATAACCCAATTTAATACAAAGGGCAGGTGATTTTAACAGACAGTCCACAAAAGGAGATATACAACTGATCACCAAACACATGAAAAATGCTCGAAGTGAGGGGAATATAGATGTAGTTGACATGAGACCTCACTGTACAGCAGCTTGAATGGCTGGGACTTTAAAACATTGGCATTAGCAAACATTGGCCAGGATGTGGAGAAACGAGTACCCTCATACATTGTTGGTGGGAATATGAAATGGTACAACCGCTTGGGAAAACAGGTTTGCAGTTTCTTGAAAAGTTAAACATACACTTACTGTGCAGTCCACTAATCAGCTCCGCTTCTAGATAGTACTACAAGCAAAATGAAAACATATGGTGCTACAGTAGGACTTGTATGCAAACCTTCAAAGCAGAATTATTTATAATTGCCCAAACTGGCTATTAAAAATAATATTGTCCATTAACTGGGAATGAATGAACAAAATACGATATGTCCATTCAATAGAGGTATAACTCAGCAATAAAAAGGACTTAACCACTAAGACATGCAACAACATGGATGAATCTCAAAAACCTTTATGCTAAATGAGAGAAGCCAGGCTCTGAAGACTCCCATGTAACTACCTACCGTTAGCTATGTCACTGTTTCTATGCACCTTAGTCCTGTTTTCCAAAAACATGTCCTCACAATAGGAGTCAGCAAGCCTTTTCTATTAAGGATCATATGGTCAGTATATTTGCATTTATAAGCACTAATGTCCTTGTCACAAGTCCACAGCTCAGCCTTGTGGGGTGATGGCAGAATCAGACAATATGTGAATGAATGGTGTGGCTGTGTTCCAATACAACTTTACTTATAAACAGGAGAGGGCTGATTTGGCCCCTGGGTGCGGTTTGCTGACCACTGCTCTAAGTTTTTAAAGTGGAAACACTATAAGTTGGTTTAGCAAGTTATATCTCTCATAAACACGATCAACTTCAAAGGATTATGTTATTTTACCAAATTTAATTGTATTTCTCCTCTGAATCCACGTTTTTTTTTGGTCTGTTTACTTAGTAATGCTGGATACTTCAAATGATAAGCTGAAAGCCTCTTAGAGACTATCCTAGAAAACTCACTTGGAGACAAAAGAACCAACAGATTAGAATATTTTTGGAAAGGTTTTAATAAAACTCTGTGGAATGTTACTGTCCCTGAATGTAGAAGCTAAAAGTGCCATTAGTCATATGCAATAGAAGCATATGTAAATTGCAAAGATTGAGGGGAGATTTATGACTGACTGTGTCCTTTATTTCTTCTGCCCTTTTGTTGTTGTTGTTATTTTTGGTTCTGTCACCCCACAG
Seq C2 exon
AGAAGTAGACTTGTACACAGGCTACACCACGCGGAACATCCTGTGCATGCCCATCGTCAGCCGAGGCAGCGTGATAGGTGTGGTGCAGATGGTCAACAAAATCAGTGGCAGTGCCTTCTCTAAAACAGATGAAAACAACTTCAAAATGTTTGCCGTCTTTTGTGCTTTAGCCTTACACTGTGCTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112541:ENST00000366882:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(21.1=100)
A:
NA
C2:
PF0159021=GAF=PD(39.5=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development