HsaINT0121861 @ hg38
Intron Retention
Gene
ENSG00000112541 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr6:165432974-165435377:-
Coord C1 exon
chr6:165435237-165435377
Coord A exon
chr6:165433130-165435236
Coord C2 exon
chr6:165432974-165433129
Length
2107 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
TTTGTCTTTTTGTTTTTCAGGAT
3' ss Score
13.16
Exon sequences
Seq C1 exon
AGCCTGTGTATATTCACGCCACCTGGGATAAAGGAAGGAAAACCCCGCCTCATCCCTGCTGGGCCCATCACTCAGGGCACCACCGTCTCTGCTTATGTGGCCAAGTCCAGGAAAACACTGCTAGTAGAAGACATCCTTGGA
Seq A exon
GTAAGTGGCTTTTTGATTCTTTGTGACACTTTTGACCTAAAGTATTTAATTAAGAAAGATGGCATATCATTTTGATGTTATAATTTAAATAGTTTCATTTTAAAAAGCATTAAAGCTAGTTACAGATCAATATATTAATGTGTAAGTTAATTTTTTGTACTCAGAAAATTCCCTTTACCCACTAACAGCTAAATGTGCACAGTTCTTATTTCAACACATGCCAGTACAGTTAAACACAAATATACTGTGTATATTCATATGAATGTAAACTAAATAATTACTGTTTTATGATTCATATTTTGCTGGGATGCATATGAATGAGTTAGCTATTGCTGTATGACAAACTACCTCAAGTTTTACTGGTATCATACAGTAGCCACGTGTGATTTCTTATGAATCTAAGGACTGGGTTATTCTGCTGGTCTGGACTGCTGTCAGTTGGATTTGCCTATGCGTCTGAGGTCAGCTGGCCATGAGTTAGGTGCTGGCTGGCCTCTTATGCCATCGCTTTCCCTGTGTCTCTCACCCGCTTCCAGTAAGGCTATCCTGGTGTGTTTTTGTGAGGTAACAGGAGTCTGAGAGAAGTAGTGGGAAACATACAAGTGAGTTTTCAAGCCACTGCTTACATCAAATTTACTACCCTCCCATTAGCCAGAGCAAATCACGTAGACAGGCCCAGACTCAGTATAGATCACTAACCATGCACATAGATACAGAGAAACTAGACAAAGTGGAGCCCTCAGTCTAGTCCTCCACAGTACATGTGGACATTTTAATGAAATTTTATGACATGGAATATAGACTTCAAAGGTAACAAGTACACAGGTGTAAAAAAATTGCTCTAAGTGCTAATAGGAGCCATGAAACCTGGGTTTTAATTTTGGTTTTTCCACCATTATTTGTATAACCTTGAATAAATTTGGTAGCTAGAGGAAGGAAGGAAGAGATAGAAGGACAGAAGGGAAGGAAGGGAGGAAGGGAGGGAAGGAGAGAAGGAGGGCCCATGCTGTATAAGTTCTCATTTGAAAATGTTCTGTTGTGTATGTAAGCTTTCAAAAGATCTGTACATTACAAGTACAGAGTTACACTATTTCATGAAGTTCTAATTCATCCTGATAGCTTCTTACAGACAGTAGAAATTGAAGAAATAGAATTGATGCTTTTGATATTAATTCATTCAATTTCCCTGTACTACTTCTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTGTGTCGCCCAGGCTGGAGTGCAGTGGCTTGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGGCTCCCGAATAGCTGGGACTACAGGCGCCTGCCACCGCGCCCGGCTAATTTGTTTTGTATTTTTAGTAGAGATGGTGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCACTGCGCCCGGCCCCCTGTACTTCTTTTGAGTAAATTTGCCAAGCTAGAAAATTTTAAAATCAAAGAACCAATTTCATTTCTTATGATAAGTAATTGATCATTATTAGTTGATTCAAATACTTAATATGGGCCTTTGAGATTCAGTTAGAATGACTGTTATTAACGTACACTTTTGTGTTACTCTAGGCTTAAAAATAGAAAAAAAGTTTATAAATAATTTTCTTCACATAGTGTTTACATTTTGAGTAATTTTCCCTGCGGCATTGTACCTGTAAACACCCTAAGACTGTTCCGGCACATAGAAGACGATGAATAAGTGCCAGCATTTATGATTACTTTTTTTATTGTCATATGAAATTAACATATGTCATTCGTTCATTAAATTTATGCTGCATAAGGATAAAGAAATATTAAAGCAGTATTTGGGTATAAGTTCCATGAAAAAGTAAGCATTTTCTTACCTAAGATTTATGGTGGCTATCATCATTTAGTTTTCCTTTGAAAAGTACTGCTTATTATTGATTACAAGTATCATGGCAATTTCTGATAGAAATAAGAATCATCACTTAATGATCATTTCACTGAATTTATGTCTTTTTGTCTTTTTGTTTTTCAG
Seq C2 exon
GATGAACGATTTCCAAGAGGTACTGGACTGGAATCAGGGACTCGTATCCAGTCTGTTCTTTGCTTACCAATTGTCACTGCAATTGGTGACTTGATTGGTATTCTCGAGCTGTATCGGCACTGGGGCAAAGAAGCCTTCTGTCTTAGTCACCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112541:ENST00000366882:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(32.4=100)
A:
NA
C2:
PF0159021=GAF=FE(35.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development