HsaINT0121950 @ hg38
Intron Retention
Gene
ENSG00000186642 | PDE2A
Description
phosphodiesterase 2A [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr11:72584551-72584944:-
Coord C1 exon
chr11:72584872-72584944
Coord A exon
chr11:72584729-72584871
Coord C2 exon
chr11:72584551-72584728
Length
143 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTCCATCTCTGCTCCGGCAGAGC
3' ss Score
6.45
Exon sequences
Seq C1 exon
CTGCTCTGTGTTCCTGCTGGATCAGAATGAGCTGGTGGCCAAGGTGTTCGACGGGGGCGTGGTGGATGATGAG
Seq A exon
GTGAGAGGGTGTGGAGGGAGTATGTGGCCCTAGGGGTGTCCGGGAGTCCGCCGGCGGCGCTGGGGAGCGGCCCGAGGTTTAACAGTCCCCTCTGTGGCCGGGTCACTAACTTCTTCCTCTCGACTCCATCTCTGCTCCGGCAG
Seq C2 exon
AGCTATGAGATCCGCATCCCGGCCGATCAGGGCATCGCGGGACACGTGGCGACCACGGGCCAGATCCTGAACATCCCTGACGCATATGCCCATCCGCTTTTCTACCGCGGCGTGGACGACAGCACCGGCTTCCGCACGCGCAACATCCTCTGCTTCCCCATCAAGAACGAGAACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186642:ENST00000334456:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(17.1=100)
A:
NA
C2:
PF0159021=GAF=PD(55.8=96.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGTGTTCCTGCTGGATC
R:
CTCGTTCTTGATGGGGAAGCA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development