HsaINT0122204 @ hg19
Intron Retention
Gene
ENSG00000095464 | PDE6C
Description
phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:HGNC Symbol;Acc:8787]
Coordinates
chr10:95386562-95389062:+
Coord C1 exon
chr10:95386562-95386628
Coord A exon
chr10:95386629-95389014
Coord C2 exon
chr10:95389015-95389062
Length
2386 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TGTCTCCTCTTGCCTTCCAGATC
3' ss Score
12.53
Exon sequences
Seq C1 exon
GACGCCTCCTGCAGACCACTGGACACTCATTAGTGGGTTGCCAACATATGTTGCTGAAAATGGATTT
Seq A exon
GTAAGTTATTGAACAAATTCAAATTTTAAATAATATTGCAAGAAACTCTTATTAGCTAAGAGATAGATACAATTGTGAAAGCAAGAATGCATCCAATAAAAGCTAGATGGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGAATCATCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAATGCCAGCTACTTGGGAGGCTGAGGCAAAAGAATTGCTTGAACCCAGGAGGTGGAGATTGCAGTGAGCCAAGATCGCGCCATTGCACTCCAGCCTGGGCAACAAAGTGAAACTCCACAAAAAAAAAAAAAAAAAAAAAAAAGCTAGATGATCACTTCCTTTGGCATAGGACAAAGGAGAGAAGAATCTTGACAGTCAAATGTAGGTTAACTGGAGACTTCTGAACTCTACACAGAAATATTTAGTCAGCATGAGAAAGGTTCCTCCATCCCTCAATTTCTTATTCTGCAGCCACACACATTTCAGATATCCTTTGGAATCCAATGACTATGATTTAATGACTGGGTTTAATTCTATCTCAAGTACATCAGTCAATTTTTTAAAGCATAAATATGGGGGATGGGGTGGGGATGGTGTGGGATGTGGAACTTTTCAATATTGAGTTAAAAGCTTGGGCCTCTAAGGTCTTGACCCACCTGTAAATGTTCTTATAACATTTAGAACATAATGTTCTTCAAAGAAAGGACTAAAACAGATAATTGCTGATGAAAAGTTTAAAAAAGAATAGGCTGCTTTTTGCCTCTTCAAAAACACAGTTGAAGGGTGCTCAGCCCATCAAATGATGTAATTTATTCAAGTTAGATCATGAAATTAATGCATGGCATGAAAGATTCCTTAAATTCTTAGGCTATATATGCTTATAAAAACTTTGAAAGATTCTCGCATTTTCTGTGTAAGAGTACTACAAAAATAGTAGACATGGTTCATTCAATTATTCTCAGAAAGCACTTACCTTGGGGCCGAGAGGCAGGCAGAGTTTGGTGAGGTGGGGATTTAAGGAGGGAGCCCACTTAGATCTTGTTAGATTGTTAGTTTTTTAGGACTTTTGTGAGCAAGTTGTTAAACTGTTGGCAGCTTGAAATCTCCCATGGCAAGAGAATTGGGACCATGGAAATTGGCAACTGATACAAGCCAAGGATTTCCCCAATTCCCAGCCAGGAGAGCTGATTTCCCCAGCACCCATTCTGGAGCTCACAGTTCTAGTTCCATCCCATAGATTTAAACAAATCACTTAACCTCTTTAGGCTTCCATTTGTTCATTTTTTTTTTTTAAGTATGAACTTAATTGCTAAGATCCCTTCTGGCTTTAAAATGCTATGATAGCTGGGTGTGGTGGCTCACGCCTGTAATCGTAGCACTTTGGGAGGCCAAGGCAGGTGGATTGCCTGAGGTCAAGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCTTGTCTTTACTAAAAATACAAAAATTAGTTGGGCTTGGTGGTGGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGTTTGAACCCAGGAGGTGGAGGTTGCAGAGAGCTGAGATCGCGCCATTGCACTCCAGCCTGGGAAACAGAACAAAAACTCCATCTCATAAAATATAAAAAATAAAATCAAATAAAATGCTATGATTTTAATTATCTCTTGGAAAGACATGGTCTTTTATTAAGATCCATTTGTGATTATGACCCAAGGTACAGAAAACTTAAAATGACCCAAAGTTGAGTGATTTCTTGTCCTTATAGATGTGAGCAATAGTCTGTGAATTCCACTAAGTAAAGTGATATCTCTCACTGAATCCTTACTTTGGTGTAACTAAAAACTTATCTGGCTGTTTCCTCCTGCCTCTTAACCATCATCTTCTAACCCAAATCTCACTTTAGGAAGAAGAAGAAGAAGAAAAAAAGCAATCCTAGCTCTGCTGCTCATACTGGCTGTAGCAGAGCTAGAATTTCTCAGCTTTCTCCTCCCCTTGGCCTGAGCAGCCTGTTGCTTTGAATTTGAAGGGGATTCCCTGGAGTCTGGGGGAGTGGGAAGGGGCAGAGACGGTACCACATATCCTCCAGTGATTTAATTAGCAGCAGGGAAGCCATCTTGAATGAGTTGTTAGCAGCTGTGGCCTAGTTGAGGTCCATTTGCCCGCAAGCAGTCAAGAGCCGTGTAGAAAATCCTCACTCCCAATGCGTTCTTTCTTATTCTGCTTTGTGGATCAAGAGGGCTCCACTACACAATATTTCAGACCATTTGTCTCCTCTTGCCTTCCAG
Seq C2 exon
ATCTGTAACATGATGAATGCCCCTGCGGATGAATACTTCACATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095464-PDE6C:NM_006204:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
NA
C2:
PF0159021=GAF=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)