HsaINT0122922 @ hg19
Intron Retention
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:33631]
Coordinates
chr1:156883183-156883552:+
Coord C1 exon
chr1:156883183-156883315
Coord A exon
chr1:156883316-156883483
Coord C2 exon
chr1:156883484-156883552
Length
168 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
AGTTGCCTCCTCCTCCTCAGGGA
3' ss Score
8.31
Exon sequences
Seq C1 exon
GTTCCAGGCCCGCTCTTTGCCAGCCTGCAGAACCCTGAGCGGCCAGGTGGGGCCCAAGGGCATGATAACCACACCACCCTGCCTGCTGACTGGAAGCACCGCCGGGAGCCCCCTCCAGGGCCTCTGGACAGGG
Seq A exon
GTAGGTGCCGGGAGGCCAGGGTCTCTGGCGCGGGTGGATGTGTGCAGCCCAGATGCCGCGTCTGAGTGTGTGTGTCTGGAGACGGGGGCTCTGGGCCCCATTTCTAGAGGAAGTGTGAGCCGGGGGAGGGGACAGAGGGCTGATTACCAGTTGCCTCCTCCTCCTCAG
Seq C2 exon
GGAGCAGCCGCCTGGACCGAAGCTACAGCTATAGCTACAGCAATGGCCCAGGCCCATTCTACAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800-PEAR1:NM_001080471:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.916
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAGGCCCGCTCTTTG
R:
CTTTATTGTAGAATGGGCCTGGGC
Band lengths:
202-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)