HsaINT0123713 @ hg19
Intron Retention
Gene
ENSG00000087157 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:30029]
Coordinates
chr17:76392389-76394432:+
Coord C1 exon
chr17:76392389-76392466
Coord A exon
chr17:76392467-76394332
Coord C2 exon
chr17:76394333-76394432
Length
1866 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TCTGTGTTCTTTCTTGGTAGGTG
3' ss Score
11.03
Exon sequences
Seq C1 exon
GGGCAGATAAGAGTAGCCAAGAGGCGGGTCGTGATGGCATCCCTCTACCTGGGGACAGGTCCTTTGGAACAGGAGCTG
Seq A exon
GTAAGGTTTATGGGGAGATGGTTGTGGCAGCAATAGTGAATGGGCCCCAACATGCCACAGCTTTTTGTGCCATGCAGTTGGTGTGGAGCTGCCTTTCCTTGGCCTCCATGTCAGAGCCAGCTCTTGTTTTTGTTGCCCCAGATATGGGCATGTCAGGAGGGCCTGGTGAGGAGAGCATGGGGGAGGGCCTGGTGAGGAGAGCTTGAAGAGGTCTGGTCTGGGCCTTCTAGGCCTCACTGGCAGTGTCCTCCTACCCACACAGGGCCCCAGGCAGCTCTGTCTGCCAGTTCAGGGCTTGGCCGACTGTGGCCTGCCACCTGTTATGGTGTAGACTGTGAGCTAAGAAAGAATGGTTTTTACATTTTCAAATAATTGGGGAAGAGAAAAAATAATATTTTGTGACTTATGAAAACTTTAAATTTCTGTATTGGTAAACAAACTTTTGTTGGAACACAGCCACACTCATTCATTTGTGTATTGTCTGTGGTCACTTTCATGCTGCAGTGGCAGAACGGGGTAGTTGTGACAGTGCCCATTTGGCCCGTAAAGCTCCAAATATTTACTCTCTGGCCGTTTACACAAAAGGCTTTCTGACCCTGTACTAGACAAACGGACCTGAGTGCAAGTTGGGCTGGCTGGCTCGTTCTGCCAAGGGCTGGTGTCAAGTGCCAGGGCTGCGGCCAGCCTTGTTTCCCTCGGACTTGCTGTTGTGCCACACTTGTCACTTACAGTGAGATAGGTGGGTGGGAAGGAGCCAGCAGTCACCAGGTTTATATGAGGTGTTGGGGCCAGCGCAGGTTCTGGTGCATGGCGGGATCTGAGGCTCAGCTGAAGTGAGTCTGTGAATGAGATCACTGCTTTCTCTTGGGTCTCCTGGGATTGCTTTCCGCTCGGTATAGTGAAACAGACGGGCCCATTGCCCAGAGTTAGTGCCGTTTCTTGGTCTGTCCTTGTTCAGAGTTACTGGTGGGAGCTATAGGGATTGGAGTGTGGAGAGGGAGGTGCAGTGGGTTCACACCTCCCCTTTCTGCCTCTCCTAGGAAGGAGGCCTCCCTCTTTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTTGCCGCAACCTCCGCCTCCTGGGTTGAAGCGATTCTCCTGTCTCAGCCTCCCGAGTAGTTGGGATTACAGGCATGCGCCACCCCCCCAGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTTAAACTCCTGACCTTGGGTGATGTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTAGAGGCCTGAGCCACTGCGCCCGGCCGCCTCCCTCTATTTTTAGGATATACCCTCCACTCCAAGCCTGGAAGCCTGTGTGTTCTCATGGGAGAAGAATGGAATGTCCGCACTGCGGAGAGTGGCCAGTGGGCAGGCCGTGTCTTGGATTCATTCATCTGCCAAATATTTACTAAGCACTCTTTACGAGGAGGGCACTGTTGGTTGTGTCTGTGAGGATTGTCTGTGTTGAAATGTACGTGAGACCTGGTGTCGTAGCGTTTCCAGGGTGGCACGGGCTGGCTGTCAGGCAGCACGCCTCTGCCTGCAGGTCCCTTTCCATTCCTGGAGGCCTGGGCCGATCAGGCCCCTGGGTGCTTCTTCTGATGATCATGAAGGTGCTCTCAGACAGATAGCTTTTGTGGTGTTGGTGTCCGAGTGCTGATGGCACAAACCTATCTTTGGAGAAGATGACGAGGGCACTAGCCGATGGGGCGATTTGTTTTTCTTTAAATACACACACCTCTTTGGGTCTTAATCTTCTTTTCTGTGTTCTTTCTTGGTAG
Seq C2 exon
GTGGACTGCCTGGAAAGTACTCTAGAAAAGTCACTCCAAGCAAAGTTTCCTTCAAATCTCAAGGTCTCCATTCTCTTAGACTTCACGCGGGGCTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087157-PGS1:NM_024419:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(15.6=100)
A:
NA
C2:
PF130911=PLDc_2=PU(23.8=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)