HsaINT0123950 @ hg38
Intron Retention
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr9:120873979-120874756:-
Coord C1 exon
chr9:120874556-120874756
Coord A exon
chr9:120874061-120874555
Coord C2 exon
chr9:120873979-120874060
Length
495 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAC
5' ss Score
4.45
3' ss Seq
CCTTCCTATCTGTACCCCAGGTC
3' ss Score
9.56
Exon sequences
Seq C1 exon
TGTCAGGGGAAGCTGATGGAGAATCGAGCTCTGGATCCAGGGACTCGGGACTCCTATGGTGCCACCAGCCACCTCCCCAACAAGGGGGCCCTGGCGAAGGTCAAGAACAACTTCAAAGACTTGATGTCCAAACTGACGGAGGGCCAGTATGTGCTGTGCCGGTGGACAGATGGCCTGTACTACCTCGGGAAGATCAAGAGG
Seq A exon
GTAAACCCATCCTCTCTGGCCCCTGTTCTCAGACTCAGAATCTCTCTGCTCATGTTCCAGCCTGGCTGTCAGACCAGGGGGCAGGGGGATTGCTGGAGAATTCCCTTCTTGTCCCTCATGCCCAAAGCTGGTGGTGGGAGGGGCCAGAGCCTGGTCTTGCAGGCACCATCCCTAGGGTCAACATCATCCAACTAGTTCTTTAGAAAAGTGCTCTGAGAGCCTACAAAACAAAAAAGTCAGGTTTGAGAGGATCACAGAGGAGCATCTGACTTGTGCTTCTGTCCTCAACATTCTGACCAAGTTGCCATCCATCGGTCCCTGGCTGTACGACTCCAGGTGACTAGGAGTACACCCTGTCCAGGAACTGCCATCCTTCTTCCCCTTCTAGCCCTGCTTTCTGGAACATACGGAGACAAAAATGGGGGAGGAAGACTATGTTCCAGGTTGGCTTTTCCCCAGCCCTTTCTCACTTGCTCCTTCCTATCTGTACCCCAG
Seq C2 exon
GTCAGCAGCTCTAAGCAAAGCTGCCTCGTGACTTTCGAAGATAATTCCAAATACTGGGTCCTATGGAAGGACATACAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403:ENST00000373896:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(32.8=30.6)
A:
NA
C2:
PF150571=DUF4537=FE(46.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGGGAAGCTGATGGAGA
R:
CATGCTGTATGTCCTTCCATAGG
Band lengths:
282-777
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development