HsaINT0124383 @ hg19
Intron Retention
Gene
ENSG00000144362 | PHOSPHO2
Description
phosphatase, orphan 2 [Source:HGNC Symbol;Acc:28316]
Coordinates
chr2:170551725-170554041:+
Coord C1 exon
chr2:170551725-170551757
Coord A exon
chr2:170551758-170553870
Coord C2 exon
chr2:170553871-170554041
Length
2113 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AATACTTTTATTAATTTTAGGAG
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTTTTCTATCAGATGTTCCACGTAATAATGCTG
Seq A exon
GTAAGTATGGAATAATTAAGAAAATATTTGAAGACAGAAATTAGTTTGTGCACATACAGCGCTGGTAGGTTTTTGGAACTATACCTTAAAAAGTGTCAAGAACTGGGGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTAGCAAAAATACAAAAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGTAGTTCCAGGTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGACCATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGTTTCAAGAACTGGGAAGGAACAGAGATTTTTACCCTGTTTGCAGGCTAACTTAGCCTGGCAGTTTCATGGAAGACACAAGACTATTCATTTCAGGAATGAATTACTCCCAGCAGTAGCCAGTAAATCAGCAATTTCGCCTGAGTTCCCTAAAGCCCCAGTTCCCACAGGATAATGCAAAGTGGGCAAGAAGTCACCTAGATGTAGTGTGTGTCGAATTACAGGAAAGGAGCCCTGAGCTTAGGGAACCCAGATCTTTATCATTTGGACAAATAAGCATGTTTCTCAAGGCTGTCCAGTGTACAAACATCCTTGAGACAATAGTCTAGAGGAAAGGGCAGTCAGTAAGACATGCAGAACCACCAGAGACGCAGGGAAAATTGTCTCCCAACAACAATTTTCTGGAATTTTAACAAAATTGGTTACAAAAGTATTGAATCTCATGATTTGATGTCAGTTACTTGCCAATTTGACATGGTGGTCAGATATAATTTGACTTCAGACTCGAGATTCCAGCTCCAACCTGTGGATTGTCACAACCAAGTCAATCTAGAGTTATTTGTCCTATACCCACCACTCTTTTATTTCTTTGTTGTGAATTTAATAAGGTAGCATATGCACTCTGATCTGAAACAGAGTTTAAATTATTCTGAGAAGAAAAAAATTTTATTACAAAATTGATGTAGAAAAAGTGTGAACTACGGTTGAACCAACCATAACCATCCCACTGCACATGTAAACATTTTCTAAAACAAAAACAGGATTATACTGTACACACTATTTTGTGACTTGCTTATTTAATTTGAACTGAATATCTTGGCTTTTACTGGCTGGATATTCTGTTATTTGCTATCACATGCATATCTTACTTAATTATTTCCCAATTCTTGGATGTCTGTGTAGTTTTTAATTTTCATTATTGTGTAAAGTATGCAGGATATTGTTACACTATGGAAACATTGCAGACATACCAAATAGACATAGATTGTGCTTTTGAAGAGAACAGTTAACTTTTTGGAATTTTAACAAATTGGTTTCAAAACAGATTCACATTCTTAAAACTAAATCTTTGTTCATATTCTTAATTTTTGGAGACATTTTAATTTCTAGTACAGCACTAAATGTCTATTGACAACAGAATGTGGAACTCCTCTATTATTAAACAAGTACAAAGAAAAAATGGACTCTGAAAATCTCAATCAGCTTAACACTGATTTTATCCACTGGACAAAAACTTATTTTCACATAACATTTCTTATTTTCGACACCAAGTCGATACCAAGTGGAAAGCAAAACTTTGTTCTCCTATTGCCAAAAGATGCTTTTCTGACATTAGAAAAACAACATAATTAGAAAATACAAAAAAAAAAATTTTTTTTTTTTTGACACGGAGTCTCGCTCTGTTGCCCAGGCTAGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCATACCATTCTCCTGCCTCAGTCTCCCAAGTAGCTAGGACTACAGGTGCCCGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTCCATTTCCTGACCTCGTGATCCCCCGCCTCGGCCTTCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCTGAAAATACAAATGTTAAAGCTTTTAAAATACTTTTATTAATTTTAG
Seq C2 exon
GAGTTAAGAAGTTTCCATTATTTTGCTCCAAACCAGAAGACTCTGTTCCCTGTATATAGAATAGGAGTAATATTTGAAAACAACTGGCTGATGTTTAAAACTGAAGATTGTCATGATTGTTTATCCTAATCCCAATGCTGAAGTAAGATTGTCTTGGAAATACTAAGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144362-PHOSPHO2:NM_001008489:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)