HsaINT0124931 @ hg38
Intron Retention
Gene
ENSG00000011405 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr11:17094261-17097264:-
Coord C1 exon
chr11:17097057-17097264
Coord A exon
chr11:17094386-17097056
Coord C2 exon
chr11:17094261-17094385
Length
2671 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
GTGGTGTGATTTCTTTTCAGATT
3' ss Score
9.36
Exon sequences
Seq C1 exon
GCTTATTGAATCAAGTTTGGGAAGCATTGCCACAAAGTTTAACTTCTTCATTCACAACCTTGCTCAGCTTCGTTTTTCTGGTCTTCCTTCTAATGATGAGCCCATCCTTTCATTTTCACCTAAAACATACTCCTTTAGACAAGATGGTCGAATCAAGGAAGTCTCTGTTTTTACATATCATAAGAAATACAACCCAGATAAACATTAT
Seq A exon
GTAAGTTTGATTTCAATATTCATAAACAATCATGCATGTATTATTGTTGTCCTTTCTACTTCCTTTGCTGATTCTGCTAAAGTTGCAAGCATTTGTTCTATTCATGCTTGTTTCTTTCATGAATGGTCCATAAATAAGTAAATGTACTTGAAGCATCCCTAACTTTTTTGGTATTTAATTCTTGCTATATTTGCTTCAAACAATAAGGACCGAGTGGTAAAGTGTGCTTGTTGTAACAAATTTAATCAATAGAGAAGTATGTAAAGTAAAAAGTCAAAGTTCCTATTCCAGTCTCTGATACAAAACACGCACACATTGTCTTTGAACAGATACAGGAACTTCAGCATGCTTTTTCCTCTTCGAGACTGTAGTGTTATCTTTTTTGTTGCTACTTTTCACCCTTGTGCTACCTTTTTTGTTAGATAATACTTTCCAGAACTGCCAGTTTTTAAATTTTTGGCAAATAGATAGTCTTTAAAAAGCTATTTTACTACTGTTTTTCATCTATTCTGTTAATAAATTTTAGTATCTTTTTGTGTGTTTATTAAAGTTATCCTAACACCATTTTATTGCATAGTCCATTCTCTCCCCAATATATACTACTACCTTTAAGTTTATATATATATCCCCAAATTTGTTTCTGGCCTGCTATAGATAGATCCTACTTGGCACCAGTATTATATGCTTTAAAGTATTGTAACTTTATAAAAGTTTAAATAGGCCGGGCGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGCCCGAGGCAGGTGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTAATAAAAATATGAAAATTAGCTGGATGTGGTGGCATGTGTCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGAGAGGCAGAGGTTGCAGTAAGCCAATATTGTGCCATTGCGCTCCAGGCTGGGCAACAGAGCAAGACGCTGTATCAAAAAAAAAAAAAAGTTTAACTAGCCAGCAAAACAAGTTTTCCTTCACTACCCCCCATAAACCTTTTGCCTTTTTTTAACTGACTTTTTATTTATTTTTATTTTATTTTATGTTATGTTATTTTATTTTATTTTATAAATATAAAAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGTCTCCTGAAACCTGTGCCTCCCAGGTTCAAGCAATTCTCATGCCTCAGCTCCTGAATGGCTAGCTGGGACTACAGGCATGCGCCAGCACACCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGCCCAGGCACATGGCCAGGCGAATTCCTGGCCCCAAGTAATCCACTCATTTCGGCCTCTCGAAGTTCTGGGATTATGTGAGCCACCATGCCTGGACTATTTTATTTATTATTTATTTTTTTATTTTTTTATTTTTTTGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGAGGTGTGATCTCAGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTACCCACCACCACGCCCGGCTCATTTTTTGTATTTTTTTTTTTTTTTTTTTTTAGTAGAGACAGGATTTCACCATGTTAGCCAGGATGGTCTCAATATCCTGACCTTGTGATCCACCTGCCTCAGCCTTCCAAAGTGCTGGGATTACAGGCGTGAACCACTGCGCCCGGCTGCCTGGACTATTTTTATTTCTACTTTTTGAGAAACGGTCTCGCTCTATTACCCTGGCTGGAGTGCAGTGATGCAGTGTTGGCTCATTTGGCTCACTTGGCTCACTGTAGCCTTGACACCTGGGCTGAGTTGATCCTCCCACCTTAGCTTCCCAAGTAGCTGGGGCTACAGGCATGTGCCACCACAGTTGGCTAATCTTTATATTTTTTATAGAAACAGAGCCTTACTATGTTGCACAGGCTGGTCTCTAACTCCAGGGCTGAAATGATCCTCTCACCTTGGCCCCTCAAAGTGCTAGGATTATAGGCATGAGCAACCGTGCCCAGCTTACACTTTTAAGTTCTAGTTTATCTATCTTAGGATGGTTATGATCACTCTTAAAATGTAGTTAGATGTGTTATAAATACAATGACTTATATTTGCTTTTTCCTATTGGTGACATATATATTACCAAGATAAAAGTACTTGAACTGCATATAACAATTAAGCTATAAATTTCTTTTCTGTCAGGAAAGGAGGTTTTTTTGCTTCTTGGTCTTTTAGCTAAGATCAATATAGGAAAGAAGGTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTACAGTGCCATCTCGGTTCACTGCAACCTCTGTCTCCCAGGTTCAAGTGATTTGCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACGCACCACTATGCCCAGCTAATTTTTGTTTGTTTAGTAGAGACGTGCTTTTACTATGTTGCCCAGGCTGGTCTCAAACTCCTGACCTCAGCTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCGGCCTGGAAAGAAGGTTTTAAATATAAATTTTATGTGTTTGTGGTGTGATTTCTTTTCAG
Seq C2 exon
ATTTATGTAGTCCGAATTTTGAGGGAAGGACAGATTGAACCATCATTTGTCTTCCGAACATTTGACGAATTTCAGGAACTTCACAATAAGCTCAGTATTATTTTTCCACTTTGGAAGTTACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011405:ENST00000265970:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078719=PX=PU(17.7=28.6)
A:
NA
C2:
PF0078719=PX=FE(36.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development