HsaINT0125333 @ hg19
Intron Retention
Gene
ENSG00000186088 | PION
Description
pigeon homolog (Drosophila) [Source:HGNC Symbol;Acc:28042]
Coordinates
chr7:77010622-77011960:-
Coord C1 exon
chr7:77011891-77011960
Coord A exon
chr7:77010672-77011890
Coord C2 exon
chr7:77010622-77010671
Length
1219 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TCTTTGTTTTTCTTTTAAAGATA
3' ss Score
10.02
Exon sequences
Seq C1 exon
TTTCTCTACCCACATATTGAAAGTCATCCTCTTCCAGAGAACCATCTGTTACTGATTTCAGAAGAGAAAT
Seq A exon
GTAAGTGTATCTTTAGGTGGAATATGGGAATTTCATGAATGGCATATCGTCTCCTAGTGTGGTACATGATTGAATCTTCTAGATATCCACCTGCCATTGCCAAGGGTCTGCTAAGCTTTGATGTCCATATGAGACCTGGAATTCCTTGGGAAGGGCTTTTCCTTTGGCCCCCAAGTGGTGTTCCCTTTGGCTGTGTTCAGCTTTCTCATCCTGGGAATGATGGGCTCTTGCATACATGGATCTGCAATTTTGTCCCATGGTAGAATGTTTGTAGAAAGTTGCATGGGTCATTTTTGTCATTTTTAGTTCATCTGTCTTTTGGATGTCTGTCATAGTGGATAACTATAATATGGAGATGCTTGGATGGAGAGAGGGGAAGATTTTAGTAGCTAGAAGAATCCCATGGCAGAACTTGAGAAGACCTACTAACTTAGACAGGTTCAGGTAGAGGCAAATAAGTTTAGGACATAAAAGGTTATGTCCTTCCATGATGGTTTCAAGTTAGAGAGGGAGAGGAAGGACAGAATTTACTGGTGGAGCTTATCTAGTAAGCTGTCTTTTGCATTACAAGATGAAACTGCTAGTTTATAGTTGGAAGGACAGGCTTGAGGGGTAAGGCTTTGTTCAGTCTCTAAGCTCTTGCTCAGTTTTGTAACTAGGACCAGCAGAAGGTAAATATGGCTGAATTCAAATTGTTACTGATAGAAAGAGACCATCTACACAGATTGTCTTTAGTGTTCAGGGTTTTGTTCACATGAAATTGACCTCTATTAAAATGCTTCCCCAAAATGTCTTGTATAATGAGTTTTTTATCTGGTATGTTCATACAAACAAGTGTTTGGTATTTGGGAATTGAAGAATAAACTCTGCTAAGTAAGCCCTTGTTAGCCCTATATAACGCTGATGGTATAGGGGAGTCAAGTACTTGCTGAGGGAACCCAGGGAAGCAGGAGGGCTAAATACTTCATGTATTGTTGATATTGAGGAGCAGAATAAATGCAGGACTTGAAATTAACTGTAAAGGGAGGATGGAGAAAAATGGGTTTTAAAAAGTTTTTGAACCTCTGTTGTGAGATTACAGTTTGTGATAGTGTTGTTTTTCTGGCCAGTTGTTCAATCTGCATTGCTTTTATAACAATGTTTTTACAAGAGTTAGGCAAAAATAGTACTCATATATTTCCTTAAGGTTAAATTATCTTTCTTTGTTTTTCTTTTAAAG
Seq C2 exon
ATATTGAACAATTTCGTATCCATGTCGCCCAAGAAGATGGAAATAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088-PION:NM_017439:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)