HsaINT0125419 @ hg19
Intron Retention
Gene
ENSG00000167103 | PIP5KL1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:HGNC Symbol;Acc:28711]
Coordinates
chr9:130690344-130690762:-
Coord C1 exon
chr9:130690712-130690762
Coord A exon
chr9:130690499-130690711
Coord C2 exon
chr9:130690344-130690498
Length
213 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
AGGCTCTTCCTCCCCTGCAGGGC
3' ss Score
9.47
Exon sequences
Seq C1 exon
GGGCCGCCCTCCCGGGACGATTTCTCGGAGGTCCTAACCCAGGTTCACGAG
Seq A exon
GTAGGAGGCCCAGACTCCCGTGTGGGAGGGACGTGTGCTGGTCTTGCTCTCTCCTCTGCAGTTTTCCCATCTGTGCAGTGGGAGTGAAGGCTTGTCCCTGAGACTTGAGCCTTGCAGGAAGGGTGTGGTCACCCTGACCCTCCTGTCCCAGGACCAACTGCACACACCCGGGCCCACGCAGACACTCCAGAGGAGGCTCTTCCTCCCCTGCAG
Seq C2 exon
GGCTTCGAGCTGGGCACGCTGGCCGGCCCCGCCTTTGCCTGGCTGCGCCGCTCCCTGGGCCTGGCGGAGGAGGACTATCAGGCTGCCCTGGGCCCCGGCGGCCCCTACCTGCAGTTCCTCAGCACCTCCAAGAGCAAGGCCAGCTTCTTCCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167103-PIP5KL1:NM_001135219:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0150413=PIP5K=PU(10.0=42.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTTCTCGGAGGTCCTAACC
R:
GACAGGAAGAAGCTGGCCTTG
Band lengths:
189-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)