HsaINT0126144 @ hg38
Intron Retention
Gene
ENSG00000065243 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr1:88813557-88822003:+
Coord C1 exon
chr1:88813557-88813733
Coord A exon
chr1:88813734-88821940
Coord C2 exon
chr1:88821941-88822003
Length
8207 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TGATTTAATTCTTCAAACAGATT
3' ss Score
7.63
Exon sequences
Seq C1 exon
CCTGATGTGTGAAAAAAGAATTTTTGAAACTGTGAATAGTGTAAGGCATCCCTTTTTGGTGAACCTTTTTGCATGTTTCCAAACCAAAGAGCATGTTTGCTTTGTAATGGAATATGCTGCCGGTGGGGACCTAATGATGCACATTCATACTGATGTCTTTTCTGAACCAAGAGCTGT
Seq A exon
GTGAGTATGCTTTAGACATTTGTCTGAGTTTTTCCATGACTGATTTCATTCTGGGAAGGAAAAGAGATTCTTTGAATTTTAGATTTTTTTTCCTAACAGAAAATAGATCTCTGCAAGAAATACTAGAACTCCTTACTTACTTTTTTGCCATATACTTTTTGTATGTATTCTGTTGTCTGTGTTGAAAATGTCATGGATTGCCCAAAACCACAATTGATACTTTAGATAAGCAATTTAGATTCATTTTAGTAAAATTTCTTTTTTTGCTATTAGATTTTCTCACTAGAGAATGCCATCCAGAATTACAGCTTTAAAGACAGATTATACTCAAAATGCACTGTTAAGTTTTTGAAAAGAAAGTACAGAAGAGTCTGTATCATATATTTATATAAAATATTTGTATTTGCCTTTCTAAAGCATAATTTAAAAGAATATCAACTATTTGCGTCCTTGTGCGTAAAATATCTCTGAACAAATGTAAAAGAAACTGGTATGTGTGTTGCCTCCAGACAAAGAGATAAAAAGCAGACTTTTCATTGTAAACTCTTTTTGTAGTTTTTGAATTCAAGGTTTGGCTTATTCAAATAAATAAGAATAATAGTAAACACTTGAAATTATATATGCATGTGTGTATATTTTCCCTGTTAGTATCTTAATTTTGTAGCTGTTAAATGGTGGAGCTAGGATTTGAACCTAGGAAAGTGATATTAATACCTACACCCTGCATGCTGGTGTTTACCAAATTTGTGTTTCCAGCCCCGTCCTCTTACCTAAACTTCCAACTCTAATAATATTCAGTGGTCAGCTAGTTTTCCATTTGTGTGGCTAAATATCTTATTTAACAACTTAAACTGAACTGATTTTTTCCATTTTTCTACCTACCTCATCTACTACTCCCCAGGCCTGCTACTCTTAGTCTTCCCTATTTTATTAAACAGCAATACCAGGTTCAAGCCAGAACACAAAAAGTCATTCTTGATGCTCTTTTTCCTTTAACTTCAACACTCAAACTATTAGCAAGTCCAGTCAACTCCACCTGTAGAATATATCCCAAGTCATAGGAAGCATAAACCCAGTAGTAAATCTCTATTGTATTTACTCTTTAGTTTTCATTCCACATCTATAATCTGATGAAATAGCAACTGACATTTGTGTTGTACTTTCTCTTTGATTCCTCCATTTGATTCTTGTCATAACCATTAGAGGTATTTAGAGCAGAGAATTGTAATACTGTCATAACCATCAAGTTTCAGATGAGGGACATAGGGGTTAATTCTAATGGGTACTGAAGCATTTTAAAAGGAGGGAAAAGCCAGAAAGTAGTAGAAGGCTACGAATAATTCATTCCCTCAATATTTAAGGCAGAGCATTACAATTATGCCTAACCTTATGCTGCCATGGGAATTTGTTTGGTTTTATTTTTTATGCTTGTTTTTGTTTTTAAAATAATACATAAATGTAGTTTGCCTTAAGAAACTGTTATTTTTGCTGAGAATATAAATTATATACAAATAAAACCATAAAGTCCAGTGAAAATACAAGAATACAATGCTGCATTACAGAACTCCAAATCTGAAAGTACCTCCCTTTATCATTCAGTTCTCAGATCAAAGGTCATTTCTTTAAAGGTAATTTTCTGAGTTCCCTAGCTAAAATATCACATCACTAACCAATTCAGTTCACTCTATTTTCTGTATTATCTTTTTCATATCATTTTATTTCTACATGAAATCATCTGATTTATTTTTAAAATTTTTATTGTCTATCTTATTTCACTTAAAAGAGAGGAGCAAGAACCATATCTGTCCTGTTTATTAGTGAAACACCTAAAAGAATACCTGGAACATATTAGGCAATCAGTGAATTTTTATTGATTGAAACCATAGAATCAAAATAGCTTGATTTCTAGCTTTGTTGTTTCATAGTCTAACTTTAGACAAATTATGTTTTCTGAGCTTCATTATCTGCTCTGTAAAATATCTTAAGGCTTGATTGAAGATTAAATAAGCTAATAAATGAAAATAACTGACACAATACCGGACAAACAGGAGCATTCAATAAAATATGTATTTTAGATGGTATACGCAATTAATCAAGGCAGTCTGTTTACAAAGAAAGAAATCAGCGGGGAGCGGTGGCTCCATGCCTATAATCCCAGCACTTTGGGAGGCAGAGGCAGGCAGATCACTTAAGCTCAGGAGTTCTAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTATACTAAAAATACAAAAATTAGCTGGGCATGGTGGCAGGCGCCTGTAATCCCAGCTATTTGGGAAGCTGAGGCAGGAGAACCACTTGAACCCCAGAGGCAGAGGTTGCAGTGAGCCAAGATCACGTCACTGCACTCCACCCTGGGCGACAGAGTGAGACCCCCCCAAATTAAAAAAAAGAGAGAAATCAAGGTATTTTTATAATTGTTACAGTATTGTTTTGCCACAAAAATAAGTTTGCTAAGAAAATTATGTTTAACTATCTTAAGCAATTTTGTTTGTTTGTTTGTTTTGAGACAGAGTCTTGCTCCGTCTCCCAGGCTGGAGTGCAGTGGCACCGTCTTGGCTCACTACAACCTCTGCCACACAGGTTCAAGAGATTATCCTGCCTCAGCCTCCCAAATAGCTGGGACTACAGGCGCGTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACTCTATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTCAGCTTCCCAGAGTGCTGGGATTACAGGCATGAGCCACCACACCTGGCCATCTTAAGCAATTTTAAGCTCACGTTTATTTTAATAAACTTCAGTAGATCCTTAAAACTTCTGGTAAGTTGTTTAATTTTTAATGTATAATTAAGTAAGTATTTCTAAGTAGTTGCATTTTATTTTTGTTTTTTATTTCTGTGTTGGGAAGTCTAAGCCCTGATGAAACTGCCTGGTGGACCCTGACCACCACCCCTGCAGCACAAGCCCCGCGTTTAAAAATTATAGACCCGTGCTCACTTCAGCAGCACATACACTAAAATTGGAACCTTATAGAGAAGATTAGCATGACCCCTGTGCGAGGATGACACACAAATTCGTGAAGCATTCCATATTTTTCTGAAATTGAGGCAGTAATTAATAGCCTACCAACCAAAAAAAGCCCAGGACCAGATGGATTCACAGCCAAATTCTACCACAGGTACAAAGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAAACAATAGAAAAAGAGGGGCTCCTCTCTAACTCACTTTATGAGGCCAGCATCATCCTGATACCAAAACCTGGCAGAGACACCACAAAAAAAGAAAATTTCAGGCCAATATCCCTGATGAACATCGATGCAAAAATCTTCAGTAAAACACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCACGATCAAGTCGGCTTCATCCCTGGGATGCAAGGCTGGTTCAACACACACAAATCAATAAACGTAATCCATCACATAAACAGAACCAATGACAAAAACTACATGATTATCTCAATAGATGCAAAAAAGGCCTTCGACAGGCGGAGGTGGCAGTGAGCGGAGATCACGCCACTGCACTCCAGCCTGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAGGCCGGGTGAGGTGGCTCATGCCTGTAATCCCAGCACTTTAGGAGGCCGAGGTGGTTGGAGCACCAGGTCAGGATATCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAACACAAAAAAATTAGCTGGGTGTGGCGGTGTAGGCCTGTAGTCTCGGCTGCTCAGGAGGCAGGAGGCAGGAGAATCGCTTGAACCCTGGAGGCAGAGGTTGCAGTAAGCCGAGATCGCGCCACAGCACTCCAGTCTGGGCGACAAAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAAGAAAAGGCCTTCGATAAAATTCAACACTGCTTCATGCTAAAAACTCAATAAACTAGGTGTTGATGGGACGTATCTCAAAATAATAAGAGCTATTTATGACAAACCCACAGCCAATATTCAACATAGTATTGGAAGTTCTGGCCAGGGCAATCAGGCAAGAGAAAGAAAGAAAGTTTATTAAAATAGGAAGAAAGGAAGTCAAATTGTCTCTGTTTGGAGATGACATGATTATATATTTAGAAAACCCCATCATCTCAGCGCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAATCAATGTGCAAAAATCACAAGCATAATACACTGATAATAGAGAACTGAATCATGAATTAACTCCCATTCACAGTTGCTACAAAGAGAATAAAATACCTAGGAATACAGCTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAATCACTGCCCAAGGAAATAAGAGAGGACACAAACAAATGGAAAAACATTCCATGCTCATGGATAGGAAGAATCAATATCTTGAAAATGGCCATACTGCCCAAAGTAATTTATAGATTCAATGCTATCCCCATTAAGCTACCATTGACTTTCTTCACAGAATTAGAAAAAACTGCTTTAGGCTGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTTGAGGCGGGTGGGTCATTTGAGGTCAGGAGTTTGAGACTAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGATAGGCATGGTGGTACACGCCTGTAATCCCAGCTACTCGGGAGACTGAGTCAGGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTAAGCAAAGACTGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCTTCTCAAAAAAAAAAAAAAAAGAAAAAGAAGAAACTACTTTAAATTTCACATGGAACCAAAAGAGCCCGTATAGCCAAGACAACGCTAAGCAAAAAGAGCAAATTTGGAGGCATCACGCTACCTGATTTCAAACTATACTACAAGACTGCAGCAACCAAAACACCATGGTACTGGTACCAAAACATGTATATAGACCAATGGAACAGAACAGAGGCCTCAGAAATAATGCCACACATCTACAACCATCTCATCTTTTGAGAAACCTGACAAAAACAAGTAATGGGGAAAGAATTCCCTATTTAATAAATGGTGTTGGGAAAACTGGCTAGCCATATGCGGGGAACTGAAACTGAACCCCTTCCTTACACCTTATATAAAAGTTAACTCAAGATGGATTAAAGACTTGAACATAAGACTCAAAACCATAAAAACCCTAGAAGAAAACCTAGGCAGTACCATTCAGGACACAGGCATGGGCAAAGACTTCATGACTAAAACACCAAAAGCAGTGGCAACCAAAGCCAAAATTAACAAATGGGATCTGATTAAAGAGCTTCTGCACAGCAAAAGAAACTGTCGTCAGAGTGAACAGGCAACCTACAGAATGGGAGAAGATTTTTGCAATCTGTCCATCTGACAAAGGGCTAATATCCAGAATCTACAAGGAACTGAAACAAATTTACAAGAAAAAAAACAGCCCCATCAAAAAGTAGGTGAAGGATATGAACAGACACTTCTCAAGACATTTATCCAAAAAACATATGAAAAAAAGCTCATCATCACTGGTCATTAGAGAAATGCAAATCAAAACTACAATGAGATACCATCTCACGCCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACAGATGCTGGAGAGGATATGGAGAAATAGGAATGTTTTTACACTGTTGGTGGGAGTGTAAATTAGTTCAGCCATTGTGGAAGACAGTGTGGTGATTCCTCAAGGATCTAGAACTAGAAATATTATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGATTATAAATTCTGTAAAGACACATGCACACGTATGTTTATTGGAGCACTGTTCACAATAGCAAAGACTTGGAACCAACCCAAAGGCCCATCAATGATAGACTGCATAAAGAAAATGTGGCACATATACACCATGAAATACTATACAGCCATAAAAAATGATGAGTTCATGTCCTTTGCAGGACATGGATGAAGCTGGAAACCATCATTCTTAGCAAACAAACACAGAAACAGAAAACCAAACACTGAATGTTCTCATAAGTGGGAGTTGAACAATGAGAACACCTGGACACAGGGAGGGGAACATCACACACCGGGGGTCGGGGGCTAGGGGAGGGATAGCATTAGGAGAAATACCTAATGTAGATGACGGGTTGATGGGTGCAGCAAATCACCATGACACGTGAATACCTATGTAACAAACCTGTACATTCTGCACATGTATCCCAGAACTTAAAAGTATAATTTAAAAGTAAATAAATCAAACAAATCTTTTCAGAAACCTATATATATATATATATATATATATATATATATATATATATATATATATATATAAATAGAAAAAAATAAAAATGCGAGGCACCATGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACCTGAGGTCGGAAGTTCGAGACCAGCCTGACCACATGGAGAAACCCCGTCTCCACTAAAAATACAAAATTAGCTGGGCGTGGTGGCACATGCCTATAATCCCAGCTACTCAGGAGGCTGAGGCAAGAAAATCACTTGAACTGGGGAGGTGGGGGTTGCGGTGAGCTGAGATTGTGCAATTGCACTCCAGCTTGGGCAACAAGAGCAAAACTCCATCTCAAAAAAAAAATAAATAAAATAAATAAATAAAAATTATTGACCCATTTTTAATAAAAATAGGTAAATATAAAACATAGCTATATTATCTACATGTGAATGTAAATATATTCTGAAAGTTTGGAATAACATTAAAGTGACAAGAATTGTTATCTGTATGAACGGCAGTGGAATGAGGTGAGATGGAGATAGATGGATTAAATAGTGTACTTTGGAGAAGCATATTACGTTTTATAGAGAAAATATTCATGTTATTACTTTTATAATTAAAAACTAATTATCCTAAGGGTCTGTTCATAGGCTATTCTACACTGAAGACATTTGCATTTTTAAATCTATTCATTTATTTCCTCCTTGTTCAATAAGCCTATCATGTATATTAGGCATTATGCTAATGCATTTAGGATAAAAATTGAAAAAGTCAAACATGGTCCTGCGCCTCAAGAATTATTCTCTCTCGACCCAGGTTTTTTGAGATCCAAACCTGCATACCCAGCTTTTACATATCATCACCTGCCCCACAGACAAAGTCAACCTGTCAAATGCCAAACTTAGTTTTGTCACACAACCTTGGCTACCTCTATGTTTCTTTATCTGTTCATTCTAAGATGGAAACCTTGAAAGTTACCTTTAGTTCTTCCCACTTCCTTATCCTGTAATGGGATACCACCTTCTGTCATGCTAATTTTTAAGTTTTTGTGAATCTGTCTCTCTGTTGCCACTACAGTGGATGTTCTCATGATCTTTTCATCTATAATATGATAAAAGCCTTATCTGTTCTTTTTTCCTCTGGATCTCTACCTACTTCTCCATCCTTCGCATTGCTACCAGAAAACTTTAACATAAATGCCATCATTCTCCTCTGATTAAAATGGTTTGATTCTCTGTCACTAAGAGAAAAAATTTCAGTATCCATAATATGACATTCAAGGTCCTTCGCCCAGGATATCTTTTCAGCCTAATCTCCTACTTCGTCCCCAGATACACCCATCCTTTACTTCAGCCACACCAAACTTACTTGTTATCAAACATGTTACGCCTTTTGCACCTCTATTTCTTTTTTCTCTCAGGTAAGTACTTTATTATTCCCCTACAAAACTTCTGCCTGTCACACTGTCCTTTGTCCTTATGTTATATTGTAATTCCTCCTGCAGAACCAGATCAAATGTCCCCTCTGAGGTTCTCAGTGACTCCACTAGGCAAAGTTAATGGCTTCCATTGTCAAGACTGTACTTTTCTCATTTTTAAATTTTACCCCTAATATCTAGCACAATGTGATACATAGTAGGGACTAAATAAATATTTGTGAAATAAATTAATGATAGGTCTGCTTTGAAGTATAAACATATAAGCTGGGATTCAAGAGCAATAAAATTTATTAAACTCCTGTTGATTTAATTCTTCAAACAG
Seq C2 exon
ATTTTATGCTGCTTGTGTAGTTCTTGGGTTGCAGTATTTACATGAACACAAAATTGTTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000065243:ENST00000370521:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(22.7=100)
A:
NA
C2:
PF0006920=Pkinase=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development