HsaINT0126145 @ hg38
Intron Retention
Gene
ENSG00000065243 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr1:88821941-88824386:+
Coord C1 exon
chr1:88821941-88822003
Coord A exon
chr1:88822004-88824309
Coord C2 exon
chr1:88824310-88824386
Length
2306 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TATCTTTTTATCCTGAACAGAGA
3' ss Score
7.3
Exon sequences
Seq C1 exon
ATTTTATGCTGCTTGTGTAGTTCTTGGGTTGCAGTATTTACATGAACACAAAATTGTTTATAG
Seq A exon
GTAAGTTAATTTTTAATTTTTTCTAATGGCTTGCTTTGGTATGATTTAGAATTAAAGATAGTATTTTGTTTTTCTTAAACATTTTATGTTTAACCAGTTTCTTAGTTTTCTCCTTCACCTGTAAGTCAAACCCCAATGTTGAAAGACGTGGTTAGCACTATGATTATATGATGAACTTTTTGTTTCCTAATCCATAGCACATTTTCTAATTAAAATAGTCAAATTATGAGTTGGTCTATGATAGTGCATTTCTCAACAATATTCATCCTAGTGAATATTTTGCATTCAAACGACTCATTGCAGAAAACCTCTATAGACCAATACTACTAAAAACGTGTCCATGATGAGACAAGTAGCTTGTGTTAGAGTGTAAAACATCACACTGCTTCCCTCATTAAGAAGCCTTATTGTCAACTGAACTAAATAGTGTATTGGTGATGTAGCTGATCTCTGTAATTCGTGGCCCAGCAGCTAGTTTGTGAACCACACCTTGACTAACACTCACTGCCCAGGACCAAGCAGATTATGAGAAGGCTAGTCAGAATTAGAAGACTATAAACATTGGATTATTTAAGCTTTTTTTTTTTTTTTTTGAGACGGAGTTTCGCTCTTGTCACCCAAGCTGGAGTGCAATGCACAATCTCGGCTCATGGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTACATGGAATTACAGGTGCCCGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTATAGATGGAGTTTCACCATGTTGGCCAGGCTGGTCTTAAAACTCCTGACCTCAGGTGACTACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGTTGTGAGCCACCGTGCCCAGCCGGTAAGGTTCTAATGATGTTTTCATGATAAGATTGTTTTACCTAATGGATAAAATGTTTCCTGGGCACAGTGGCTCATGCCTGTAACCCCAGCATTTGGGGAGGCCAAGGTGGGAGGATTGCTTCAGTCTAGGAGTTTGAGACCCGCCTGGGCAACATAGTGATATTCTGTCTCTACAAAAAAATAACAAAAATCAGCCAGGAGTGATGACATCTGCCTGTATCCCAGCTACTCAGGAGGCTGAGGTGGGGGAATTCCTTGAGCCTGGGAGGTCAAGGCTGCAGTGAGCCGTGATTATGCCACTGCACTCCACTTAGACAACAGAGTGAGTACCTTGTCTCACAAAAATAAAAAATAAATTGAAAAAAATGGATAAAATATTGTCAGTTTGCCTAATTTGTAAACAATTAGTATGGATGGATAGCTTTCTCTTATTCTTTCAGAAGATGAAACCTGCCCTCTGATGCCTTATTAATACTGTTAACTTTACAATTCTTTCTTATGGATGGTATATAAGCAAACTTTAAAACTGGATTAAGTTGGCCAGGTGCAGTGGCTCATACCTGTAATCCCAGCACTTTTGGAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAAACCCATCTCTACTGCAAATAAAAAAAAATTAGCCAGGCTTGGTGGTGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCACGAGAATTGCTTGAACCTGGAAAGTGGATGTTGCAGTGAGCCAAGATCACACCAGTGCTCTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTTAAAAAAAAAAAAAAAAAAAAAAAAAGGCTGGGTGTGGTGGCTTACGCCTGTAATTCCAGCACTTTGGAAGGCTGAGGCCAGCGGATCACGAGGTCAGAAGTTCAAGACCAGCCTGGCCAAAATAGTGAAACCGCCTCTCTAATAAAAATACAAAAGTTAGCCGGGTGTAGTGGCACGCGACTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGTACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGACCACGCCATTGCACTCCAGCCTGGGTGACAAAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAGGATTAAATTAGATTATCACAAATAACAAATTAAATACATTTTTCCTTTTTTATGTAACAGGAGAAGAATTTCTCATGAGCTACCTTATATAGAGTAATAAACTTACCAAAAGGAAGAAAACTGAATGTTTGTGTTATAGTATTTAAATCTCAAATCATAACTTGGAAATCCCATTTTTAATAAAGAGAAAACACAGTTCCAATTGCAATTATTTTTTTAACTGTATAACCTACTGATTTCTTTGATTTTTTTTTTTCATGCTGTATCTTTTTATCCTGAACAG
Seq C2 exon
AGATTTGAAATTGGATAACTTATTGCTAGATACAGAGGGCTTTGTGAAAATTGCTGATTTTGGTCTTTGCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000065243:ENST00000370521:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development