HsaINT0126160 @ hg19
Intron Retention
Gene
ENSG00000160447 | PKN3
Description
protein kinase N3 [Source:HGNC Symbol;Acc:17999]
Coordinates
chr9:131476476-131476943:+
Coord C1 exon
chr9:131476476-131476644
Coord A exon
chr9:131476645-131476840
Coord C2 exon
chr9:131476841-131476943
Length
196 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTCTACTTTCTCCCTACAGTAA
3' ss Score
10.38
Exon sequences
Seq C1 exon
GCCAGGACTTCCTGAGGGCTTCGCAGATGAACCTCGGCATGGCGGCCTGGGGGCGCCTCGTCATGAACCTGCTGCCCCCCTGCAGCTCCCCGAGCACAATCAGCCCCCCTAAAGGATGCCCTCGGACCCCAACAACACTGCGAGAGGCCTCTGACCCTGCCACTCCCAG
Seq A exon
GTGAGGAGCTCCCTTGCCCTAGACTGCATGCTCCTCTGTGGCGGCTTCCTGACTCCAGATCCAGGCGGTATCTGTCTGTCTGTCTGCATTGCTCAGCCCGCTAACCCTCTGTCCATCTCACTTTGGGTTGGTGTGTCCATCCTGCCAGCTCTTGCGTCTGCCTGTGCTGGGCACTGTGTCTACTTTCTCCCTACAG
Seq C2 exon
TAATTTCCTGCCCAAGAAGACCCCCTTGGGTGAAGAGATGACACCCCCACCCAAGCCCCCACGCCTCTACCTCCCCCAGGAGCCAACATCCGAGGAGACTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160447-PKN3:NM_013355:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.509 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGGCTTCGCAGATGAAC
R:
AGTCTCCTCGGATGTTGGCTC
Band lengths:
258-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)