HsaINT0126447 @ hg38
Intron Retention
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1 [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr2:159977284-159979914:-
Coord C1 exon
chr2:159979830-159979914
Coord A exon
chr2:159977417-159979829
Coord C2 exon
chr2:159977284-159977416
Length
2413 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ATGAACTTCATCTGCTGCAGGTT
3' ss Score
7.47
Exon sequences
Seq C1 exon
GACAGAAGAAAGGCAGTTCTGGATTGGATTTAATAAAAGAAACCCACTGAATGCCGGCTCATGGGAGTGGTCTGATAGAACTCCT
Seq A exon
GTAAGTCTTTTCAAACTGGAGAAAAGGGATGGATTCAAAACAAGTGGGCCTGGGACCACTTGGTAAACCAACCAAGAGAACCTAGAAATGATGGCCAGAGCTCCCATGACAAAACTGCACCAGACCTTAGTACCAGGAGAATTATTTGGCAAGGTCCTGAGAAATCTTTGCTAGCCATATTGTTCTGAGGCCATTGTACAATTTCAGCCTGAAAAAGTATCAAAAACCTCCAAAAAGTCCCCCCAAACCATCTCCCATATGAAGTCTCTCTGGCAGAGAAGCAGCTATTCTTTAAAATAACACAAGACTCCCTTTACCCTATACCTCCCTATCCTGCATATCACCTGATTATCTGAGTATGGGAACCTTGTCCATGTCATAATGAAATGAAGATTATTTTGGAGAATGATTTTTCATTTATCTCACTCTGAAAGGACAGTAATGCAAGTTTTAGAAATATCACCTTCTAGAGCAAGTTATTCCAGAAGGAAAAAAAAAGTCTTGGTTTTCATTCATTCCCATACTTGCAAACCTCTATGAAGGACACAGAGAACTCACTATTGTATTTTTTTCCAGTTGCAATGGGTAATTCTCACATTTTTCTCAAAATGACAGGGAAAAAACTGAAGTAGTATCCTAGATTGAAGTGGGATCCATCCTACGGCACATGAAAAATCACATTATTCACTTTCACCTGTGAAATGGGGAGACTCCTAAGAGCCTGCAGTGAGAATTTAATGCAACTGCTGTTTATTGAGTCCTTATACTGTTCCAAGCGCTGAGCTGAATGCACTCCTACATGATCTCATTTCATCCTTACAATAACTCAGTGCCATGGGTATTAGAATGATTAAGTGGCTTGCCTAAAATATATAGGAGAGCCAGGATTTGCACACAGGTTGTCTGACTCCAAAGTCACAATGTTATAATATCTCATGATTGGCAAAATATCAGTAGCCAAACTTTGAAGTAGTAAAGAACAATAGAGAAAGCCCCGTACCAAGATGGTTTTCAAATTTATGTCAAGGAAGAGGTTTATAGAAGAGAGTAGGAAGAGATTTTAAAGGTCATTCAGCCCCACTAATCCATTTTTCTGATAAAGAAACCAAGGCTCAGAAAACAGAAAAGGCATAGCAGGGTCAACTTACTCCATAAATGGCAGCCACTACATGAGACAGCTGGGTGGTTCAAGTCAATGTAGCACTCGAAAAAGAAATGTGACACATAGAAGTTGAGAACACTTTCTTTTGTTTTAGTATAACAAACTCATTAGTAATAGGAGAGGAACAGACAATCTGGGTCAGAATAAATTAGATAAGGCCATGAAGCAGTGGCCGAGCTTCTCACTAATATCTGCTGGACAAAATGAATTCAAATCACACCATTTTCTGAACCTGAGGCTATATATATTTTAGATAGATGAATTATTACGTGACAGTGTACATGTTTGAGGAGGAATATAAAGGATTTTAAAACATCCTTTTTTTCCCCAAATTTTTACCCCAATTTTACTTGTGGTACATCCATTCTTCTGTGAGATAGTCATTAAATAATTGAGAAGGTTGATTCTTTAATACCCCCGTAATGTGAATTATATGAGTTATGTGGTCACTCATGGAAAGTGACCTGATAGATTCCTGATTAAAGCTAGCTATAGCTTAGAATTTAGTTATTAGAGACAAAAAACTTAGCATATGTTCAAAGTAATCAAAATCAAAGTTAATACCAAGATCTGGCACACCCTTGAGTCCCTAAGTTTACCCAGGATTCCAAGGCTAGAAAATTTTCCCAGTTAGAAAAATGTGCAAATTCAGACCAAAGCTTGCATTTGATTTGTTCCTTCTGGAGAAAGGAATAGCATACCTTTTTTTAATTTTTATTTTATTTATTTATTTTTTTTGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGGGATTTCGGCTCACTGCAAGCTCTGCTTCCTGGGTCCACGCCATTCTCCCGAGTAGCTGGGACTACAGGTGCCCACCACCACAACCAGCTAATTTTTTGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGAGCTTGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCTGGCCTTTTGTTTTCTTGTTTTTGTTTTTGTTTTTTAAAAAGGCATCTTTAAGAAAAAAATGCTAAATATTGATTAGCTTGTTCTTCACAAATGTGAAACAACCTTCAACTAGAATGACATCCAGACATTTCTGAAGCTTCCTGGAGTAGCCTATAATGCTTATGTACAGGGATGCCCTTTTTGATCTTTTGAAACTTTGTGGGGGGATCATCATTAAGGAATAATGAACTTCATCTGCTGCAG
Seq C2 exon
GTTGTCTCTTCGTTTTTAGACAACACTTATTTTGGAGAAGATGCAAGAAACTGTGCTGTTTATAAGGCAAACAAAACATTGCTGCCCTTACACTGTGGTTCCAAACGTGAATGGATATGCAAAATCCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246:ENST00000283243:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.2=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.9=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development