HsaINT0126513 @ hg19
Intron Retention
Gene
ENSG00000104368 | PLAT
Description
plasminogen activator, tissue [Source:HGNC Symbol;Acc:9051]
Coordinates
chr8:42046452-42048932:-
Coord C1 exon
chr8:42048890-42048932
Coord A exon
chr8:42046590-42048889
Coord C2 exon
chr8:42046452-42046589
Length
2300 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGG
5' ss Score
3.63
3' ss Seq
TGGCCTGTCTTTTCTCATAGTGA
3' ss Score
8.25
Exon sequences
Seq C1 exon
GAAATCCATGCCCGATTCAGAAGAGGAGCCAGATCTTACCAAG
Seq A exon
GTCGGGTGAAGCTGAGGGGTGCATGGGGTCATCAGGGAGGGAGGCAGGGCGGGGTGCAGGGTGCATCACCCACCCACCACCTGCCTTCTTCCACCCACCACCTGCCTACGGTGTGACAGTGCCATTGCAGCATGATTCTACAGAGATGCCTGTGTCGGCACCATTCTCCCATCAGCTGCGGCCACTGGGCGGGTTCTGATTCTGAGGGGAGCAGAAACAGGTGTTCCCCCCCAAGGAGCCAGGCTGTCAGGGATCACAACCTAGCGGGGGCTGGGGGGGGCGGCCACTGGCCCAAGGTCCTGGTTATACAGATCAAAAGGCAGAGCCCAGGAGAGAGCAAGTGGCTTGCCCAGGGTCACACAGCCGCCAGCAGCACGGCCAGGGCAGTCACAGCCGAGGCCAGGCCCATGCTCTGGGTCTCATCCTAGGCTGTGATCCCACCACAGTGCACCGGCAGCTTTGGTAACAACATCCCTGTGTATCCATTTCCCTCTGTTGATCCAACCGGGATGTCCCAACTGGGATGTCCCACCCAGGCAACCCCTCGACATGGTGGGGTCTCTAAGTCCACATCTAGAGTTGACTCTAGAAGGCTGAGGAATGCGAGGCCCAGCTTCAGGTCCAAAACTACCAACTTAGGCCCTCGATTTCCCTCCTTCACGACCCAGTTCCTTCGAGTCTGGAAGACTCTGCAATACCCTTTGTGAAGGTGTTAAAAAGGGTGACTCACTCCCCAGAGCGAGTCACACCTGGACTCTTAATGCCTTCGTTGTTGGATGGCATCCTGCTTCCTACCAGGTTATCCTGGCCTCAGTGACCTCAGAAGCAGCAAGGGTCTGACTTACAGTGGGCACGTGCTACTTCTTTAATTAATTGAAAGTAAAGTTGTTGTTTTTTAAGTTGGCATTCTGGCTTGAAAACAGAAAGATGGCATGAAAATATTAATGGGAGTACTTCAACTATTTTCATTATGCCAAAAATACTTGGAGAAGTAGCACATTTTCTGCAAAGTCTAAAATGTCAATTTTCTTTGGGGCCAAAAATGCATCATTTCTGTGTGGTAATACTTATGTGGATAAAAAACTCTGGTAGACAGTTATGCATATATATATTTTTTGGTGAATTACAATGAGAAAAAGTCCAGGTGCAATGGCTCACATCTGTAACTCCAGCACTTTAGGAGGCGGATCCAGGAGGATGGCTTTAGCCCAGGAGTTCAAGACCAGCATGGGCAACATAGTGAGACACCTCTGCCTCCCCCACCCCACCCCGCCTCTACAAAAAAATTTAAAAATTAGCTGGGTGTGGTGGTGTGCACCTGTAGTCCCAGCTACTTGGGAGGTTGACGCAGGAGGACTGCTTGAGCCTGGGAGGCAGAGGTTGCAGTGAGCCAAGACAGCACCATTGGACTCCAGCCTGGGTGACAGAGACCCTCGAAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAAAATTAGGCTGGGCACGGTGGCTCATGCCTGTAACCCCAGCACTTTGGGAGACCGAGGTGGGTGGATCACTTGAGATCAGGAGTTCGAGACCAGCCTGTCCAATATGGTGAAACCCCGTCCCTACCAAAAATACAAAAATTAGCCGGGCATGGTATCGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTTCACTCCAGCCTGGGCGACAGAGTGAGACTTTGTTTCAAAAATAATAATAATAAATAAATAATAAATAAATAAATCATATGAGAAGATACTCAATGGCACTCAGAAAAGAAATGCAAATTTATTTTATTTTATTTTGAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTACAATCTCGGCTCACTGCAACCCCCACTTCCTGGGTTCAAGCAATACTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCACCATGCCTGGCTCATTTTTGTATTTTTAGTAGAGATAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGAGCTCAAGTGATTCACCCACCTCGGCCACCCAAAGTGCTGGGATTACCAGCATCAGTCACCGTGTTTGGCCAGTATTCATTATCTTGTTGTCTTCCAGTTGTGTCTCTTCAATAAGGGAGTATGCAATGGAGTCTATAGAAAGCAAGTGAGGGAGTTTTCTCAGTAGGTGCAAGGGTAGTGAGGCATTTCATTTTGAGTCATACTCTGATGAGGCTGGCCTGTCTTTTCTCATAG
Seq C2 exon
TGATCTGCAGAGATGAAAAAACGCAGATGATATACCAGCAACATCAGTCATGGCTGCGCCCTGTGCTCAGAAGCAACCGGGTGGAATATTGCTGGTGCAACAGTGGCAGGGCACAGTGCCACTCAGTGCCTGTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104368-PLAT:NM_000930:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003913=fn1=WD(100=80.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)