HsaINT0133008 @ hg19
Intron Retention
Gene
ENSG00000178055 | PRSS42
Description
protease, serine, 42 [Source:HGNC Symbol;Acc:30716]
Coordinates
chr3:46873366-46874696:-
Coord C1 exon
chr3:46874437-46874696
Coord A exon
chr3:46873527-46874436
Coord C2 exon
chr3:46873366-46873526
Length
910 bp
Sequences
Splice sites
5' ss Seq
AACGTGGTG
5' ss Score
-9.84
3' ss Seq
CTGATGATCTTCTTTGATAGGAG
3' ss Score
6.74
Exon sequences
Seq C1 exon
CCGTTTCCATTACAGTGTCAAGATGGGAGATCGGAGTGTCTATAATGAAAACACAAGTGTGGTGGTCTCAGTCCAAAGAGCTTTTGTCCACCCTAAGTTCTCAACAGTTACAACCATTCGAAATGACCTTGCCCTTCTCCAGCTCCAACATCCTGTGAATTTTACCTCAAACATCCAGCCTATCTGCATCCCTCAGGAGAATTTCCAGGTGGAAGGTAGGACCAGGTGCTGGGTGACCGGATGGGGCAAAACACCAGAAC
Seq A exon
GTGGTGAGACTTCAAGGCAGGAAGCAAACTTGGGGCAGAGAGGAGGCACCCTTACTCCTGGAGTAGACATGAAGGCCACAGAAAGGGGCAGGGAGGCAAACTGCCTGGTGAGTGGCAGGTGGTGAGGGGCACGCAGTTTAGCAGCAGTCAGGGTCATGGTTCCTGGTTGGCTTGGGTGACATCAGAAACTGGGTTGAGTTCTTTTGTTGCAACACAAATATTTGATGGCAGCCATTTAGGAAGACTTCTGTCCTGGAACTGGAGTTGCTCAGCCAGGAGAAGAAGAAACACATGGGCAACATCTCCTTCTGTGGATTCGTGGGGGCACTGTGCTTGACTGGTTTGGGGGATTTTTAGGTTCCCTGGACAGAGCAAGATGCTATAAAGTTCTCCCCAGGAACAGCTCAGAGGGTGATGAGCTGTCTGCCAGTCAGAGCTGCTCCTCATTCGAAGCACCTGCTTTGGTGGATAGGGTATTTTCTGTTCCTGGGGATGTAGAGAGAACCAGAAGACTCCTATGGGTCGGGTGTATGCCCTCCTATCCCTGGGGAGAAGCTGGATTTGGTACTTCTGGGGCATTTTCTGCCTGAGAGTCTGTGATCCTGCTCTAGACAGTAAAGATGCTTTACTGATGCACAGGACACACTCTCACTATTACTACTGATACTTACAGTGACGATACTTGGTTGTCATTTCTCAGGTTGGCAAGGCCTTGCCTCTCCCTCTCCTGAAATATTCTTCCTGTTCCTGTCTTGGTTTTGTTTCTTACGTCCTCCTCTCTCCATGTCAACTTTGGGCCTTCTGTGTCAAATGAGAATAATACTCACTGCCTTGGCCTTTTTCCAGAGGGATGCTGGGTGCTTAGGGGCCTATTGTCCACTTGTGCAGATCTGATGATCTTCTTTGATAG
Seq C2 exon
GAGAGAAACTTGCATCAGAAATTCTTCAGGATGTGGACCAATACATCATGTGCTATGAGGAATGTAATAAGATAATACAGAAGGCCTTGTCATCTACTAAGGATGTAATAATAAAAGGGATGGTCTGTGGCTATAAAGAACAAGGAAAGGATTCTTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178055-PRSS42:NM_182702:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(40.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(24.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGTGTGGTGGTCTCAGT
R:
TAGCCACAGACCATCCCTTTT
Band lengths:
342-1252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)