HsaINT0137484 @ hg38
Intron Retention
Gene
ENSG00000108352 | RAPGEFL1
Description
Rap guanine nucleotide exchange factor like 1 [Source:HGNC Symbol;Acc:HGNC:17428]
Coordinates
chr17:40190434-40190762:+
Coord C1 exon
chr17:40190434-40190531
Coord A exon
chr17:40190532-40190639
Coord C2 exon
chr17:40190640-40190762
Length
108 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ATGCCCCTGCCTGCCACCAGGTG
3' ss Score
9.38
Exon sequences
Seq C1 exon
AGAAGGTCCTTCTCCAGCCCACTGAGGACTGTGTTTTCACCGCACTGGGCATCAACAGCCACCTGTTTGCCTGTACTCGGGACAGCTATGAGGCTCTG
Seq A exon
GTAAGAACTTCCCAAGGCCTTGACTGGAATGGAGGGCTGAGGAGGGCTGTGAGCAATCCCTCACCCTGCCACCAGGAGCCCAGCCCCTATGCCCCTGCCTGCCACCAG
Seq C2 exon
GTGCCCCTCCCCGAGGAGATCCAGGTCTCCCCTGGAGACACAGAGATCCACCGAGTGGAGCCTGAGGACGTTGCCAACCACCTAACTGCCTTCCACTGGGAGCTGTTCCGATGTGTGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108352:ENST00000613811:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.127
Domain overlap (PFAM):
C1:
PF0078818=RA=PD(24.4=57.6)
A:
NA
C2:
PF0061714=RasGEF=PU(13.0=58.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGTCCTTCTCCAGCCC
R:
ATGCACACATCGGAACAGCTC
Band lengths:
218-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development