HsaINT0138557 @ hg19
Intron Retention
Gene
ENSG00000184898 | RBM43
Description
RNA binding motif protein 43 [Source:HGNC Symbol;Acc:24790]
Coordinates
chr2:152109269-152112257:-
Coord C1 exon
chr2:152112047-152112257
Coord A exon
chr2:152109370-152112046
Coord C2 exon
chr2:152109269-152109369
Length
2677 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
ATGCCAGTGTTTCCACTTAGTTG
3' ss Score
3.57
Exon sequences
Seq C1 exon
GCATCAGTTTTGAATGTCAAGGAATCCAAAGCTCCTGAAAGAACGGTTGTAGTTGCTGGTCTTCCAGTTGACCTTTTTAGTGATCAATTATTGGCCGTATTAGTGAAGAGCCACTTCCAAGACATTAAGAATGAGGGCGGAGATGTTGAAGATGTGATATATCCGACAAGAACCAAGGGAGTTGCATATGTAATATTCAAAGAAAAAAAAG
Seq A exon
GTATTTCCAAGTCAAATTTTTGTAATTTTAGAAATACTTCTTCAATAAAATTTAAAAATTACATTTTATTAAAATGATCCACGGAATTGGTAAATTTTAAAGTAGTTTTTTTTTTGAGACACAGTCTCACTCTGTTGCCCAGGTTAGAGTGCGGTGGCATGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGATTACAGGAGGCGCCTGCCATCACGCCCAGCTAAATTTTTTATTTTTAGTAGAGACAGAGTTTCACCATGTTGGCCAGGTTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCTGCCTCAGCCTCCCAAAGTACTGGGATTACAGGCATGAGCCACCACGCCTGGCTAAAGTAACTTTAAAAAAAAATATTTTATTGTGAATATACAAATGGCACGATATTGCTTTAGGAAGAAAAGATATGAAAATGGCTCATGATAAAGTTGTTAGTGACTGGCAAATTCTTGAAAACTTTCTTCTGTATTTTGAATCTGTCTATATCTTGGGGTGAAAGTGTTACATTTTATTGTAGAAAACCTGTAAAATACCGACAAAATGGAGAAAAACCCCACAAAGATGATATATAATCTCATAAACAAGATGACTACTTTGGGAATTTTCAGGTGGCCTCAATTATATATTTTAGAATAAATGGATATTCTAATATAGTATCTGCCTTATTACTGGCAAAGTTGAATTGAGAAGTGTGGCTTGGATTTGAGATCAGAATGAGCCATTCTGCTCCCTGCACCCAATCCCTGACTTAGATGGTGAGGAAGTTGGGTTGGCAGAGCACACATACCCCTTCAGCCTCATGGAACGGGCAACCTTCTTTACAGCTTAGTGGCTGGCAGAAAATACATTGCCAGAGAAAAACAAGTCTCCATGCCAGGCTCTTGGAGGTGAACATACCACATGGGGGTTGGAGCAGAGCAAGAGAACTTGCTTTGCTTGAGGGATGACAGAGTCCAGAGAAAGATCCAAGGCACTATGGATTTTCAGTACCTTTAGCTGTCACCATTAATTAAGTCATTCCTTCTCAATGGGGATGTTCAGGTAAGGGATGGCAGGAGGGGCTCAGGGGCTCATTTTTTCTCTAAGGAGATGGTAGTGTTTTTGAAAGTTAATATTTTATATGTTGAATTGGCAACTCAGAGAGACAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGATTGGCCTCGGTCATTCATTCATAAATATTTTCTGAGTACCTGTTATTTACCAGGCAGCATGCTGGGTCTTGAGGATACAGCAATAAGTGAAATAGGCAAAGCCTTTTTTTTCTTGAGATGTACATCTGGACAGATTTTAAACAAATGAATCTATAATATGTTTGGTGCTTTATTTATTTATATAAAACTTAGATATTTGTTTATTTAAATATATTTATGATTATATATTCATAAATAAGTGCTACGACAAGACATAAAGAAGAATAAAGGGATAGAATATGACGGAAAGTGCTGTTTTAGATGAATAGGAAGGGAAATGCTCTGTTTAGATGACATTTGAGCAGAGGCCAAGGGAATAATTCATACAGATAAGTGGGGAGAACATTCTAGGCCAAGGGAGGGACTGGTAATTTTGTGAGTGGGGAGCATGCTGGGTGTGTGGAAGAACAGCAAGGAGGCCTGTGTGGCTGGAGTGGAATGAGCTGGGGGAGAGTGATAGGAGATGTGGTTAGATGGGGAGCCGGGGCCAGTTTATGCTCAGTAACTGCTGGATCATGGAAAGGTGTCTGGGATTTTATTCTGGGGTGAGATGGAAGGTTTCAAGCAGGGGATTGACAAGATTGGACTGCCTTTTCTTAAATGAGCAACCTAGCAGCTGTTTGAACAACAGGAATTACTACTCATCGTTGGCTTTGATAGGGCAGTACCAGGGCAGGTGATAAGAACTGGTGGGTATTCGGGACATGTTGATGGATTAAATATCATTTTCTGTGGTGGAGAACACTGGGGATAGAATACATTTGGGAGGGAGATAGTTATCAACAGTTCAGTTTGGGTCAATGAGATGCCTATTAGGATAATGAGGTAGAGAGTTCTACAGGCAGAAGGGAGAAAGATCGAGGCTGAAGATAGAATTTTGAAAGCGATTCACGTAGAGATGTTGTCTAAAGCCATAGAGATGGTTGAGATCACCCAGGGGATGGGGTACAGGTTAGCAAAGAAGCATGAGGCCTGAGGTCCAGGTCTCGCCAACATCTAGAGAATGGGAAGAGAGGAGGATTAGGAAGGAGACTCAGCAGGTCAGCCAGTGAATTGGGAGGAAAACCAGAACAGTATGATATCTTGGATCAAGAATGTAAAGTCTTCTTGTGACTAGAATTAACAGAGATGGGGATATACCTTTACATTTTTGTTTTTTATTCATGCATATAATACCTTGTGTGCTTTATAACATGATTTGGATAATATTTACACATAAAATGAACTTTAATGAGTTAAAGTGCAACAAAAAAGTGATTTGAATGTTGAATTTAGAGGAAAAATGTAGAAAAAAATCTTAGACATTCTTCTATAATTGAATATGCCTATTTTTATTAAAAAATTATTAGTGTATCATGCCATAAACACTTCTGATGCCAGTGTTTCCACTTAG
Seq C2 exon
TTGCAGAGAATGTCATCAGACAAAAGAAACACTGGCTAGCAAGGAAGACTAGACATGCTGAACTCACAGTCTCTCTCAGAGTCTCTCATTTTGGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184898-RBM43:NM_198557:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF142591=RRM_6=PU(74.3=77.5)
A:
NA
C2:
PF142591=RRM_6=PD(24.3=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)