HsaINT0142378 @ hg38
Intron Retention
Gene
ENSG00000005175 | RPAP3
Description
RNA polymerase II associated protein 3 [Source:HGNC Symbol;Acc:HGNC:26151]
Coordinates
chr12:47702688-47706061:-
Coord C1 exon
chr12:47705952-47706061
Coord A exon
chr12:47702847-47705951
Coord C2 exon
chr12:47702688-47702846
Length
3105 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGTTGTTCAAAACTCTGCAGACC
3' ss Score
5.16
Exon sequences
Seq C1 exon
GCTTGTGGGGAAGCGCAGGAGGCGGGGCTTTGCGTGAGTCACTGCCGGGCTCGGCGTGAGTCGCTGCGGGGCTGACGGGGTGGCAGTGCGGCGGGTTACGGCCTGGTCAG
Seq A exon
GTGAGCGGGCGTTGCGGTTCTCGCTGCCCGGAGCAGCGTAGGAGATCCTTGGGGTGGCCGGTGGGAGGAGGGGTAGCGGTTATGGGTACCGGTGAGGCGGGGCGGGCCGGGGCTGGCGGTGGAGGCGCGCGTTGAGGCGGCGCGTCGGTGTCCAGGGCAGCGGCGTCTCGGGTCGCGCGTTCCCGGAGGGGCTCGCCCCCGCAACCCGGGCCTGCGCGCTCTGCTTTGCAGGCGGACCCTCCACCCTGCTGCGATTTTGCAGTGCTCGGGAAGGCAGAGCCGCCCTCCCGCAAAGACCGAGGTGGGGCCCGCCCCCTTGCGGCGTGGGTGTGCGGTGTTCGCCGGGACAGCGGGTGTGAAAGTGATACCCCCAGCGCTGGAAGTTTTTGATTGCTGGCTCGCACCCCCGCCCCATCGCAGGGTCCCTGGGAGAGTTTTTGGGCCTGCTCGAGCAGCAGCGGTGATGGGTGAAATGGAAAAGCATCTAACCCCCGTCAGCATCTCACTGACTTGTTGCGCTTTTATTCATTTATTTGAGTTCCCAACAAAGCGTTGTACTAGTTTTGTTTTTGAATGAGTTGTGCATATATGGTCAAACATGGACACTGCCTGAAAGAAGCTTAAACCTAATTTAGTTGTTGAGGCTACGAGTCAGAAGACCTATCTGCATCTGCAACTGTCCCTTCTTAGTGAGGTATTTTTCACTGTCCTAAACAAATGTTTTTCTAATTCCGTCTCTCTCCCTCCCACCTTACTTCTCTTCCCTCCGCCTAAAGCTTTGACTCTTCTCCTACCTTTTTGGAGATTTTGCCCCATCACTCATCCTTTTTCCTGTATCTTTTACTTTGTTGCTTTTTCCCCAGACTATGCTCAAGAACAAGTCTTATATTATCAAAGGCAAATGTACTGTAATCTCCATATAATCTCATTTACGTAACTCATTTCATTCCCCCCCCTCCTTTTTTTTTGGTCCCAGGCTGGAGTGTAGTGGGCCCGTCACCGCCCACTGTGGCCTCGATCTCCCGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGAACTATAGGCACCCTCCACCACGCCTGGCTAATTTTTGTGTTTTTAGTAGAGATGGGGATCTCGAAGTGTTGCCCAGGCTGATCTAGGAACTCCTGAGCCCAAGCTATTCCCCCTGCCCCCCAACCTCTGCCTCCCAAAGTGCCGGGATTACAGGCATGAGCCACCTGCGGTTGGCCTTCCACCCTTTAAAAAAAATCTTATTGAAACTCTAAATAGAGGTCAGGCGCGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACGTGGTGAAACCCCGTCTCTACTAAAAAAAAAAAAAATACAAAAATTAGCCGGGCGTGGTGGCCTGCACCTGTAATCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTAGGAGGTGGAGGTTGCAGTGAGCTGAGTTTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCTGTCTCAAGAAAAAAAACAAAAACTCTGAATAGTCTTTTTATGACTAAATATAATGCACTTTCTTTCCCTCTGTGGCATTTGGCACTGCTAACCTCTCACTTTCTTCAACTCATTTTTTGTCATCTGTAACAGTACACTCTAGGTTTTTCTCCCAACTGTCTAGGTGCTACTGCCTACTTTTTTCTTCCTTGGCATCTCTTTCTCCGTTTAGTGTTCTCCAGGTTCACCCCATTCCCCAGTTGTCACAATGGTTAAACATGGCCACATCCTTGATTCTAGCTTCTACCTTTCTGCTAGTGACACCGGAATTTATCTCTATTCCTACATAGCTACCTATGGGGTATCTCTTCGCCCCATTAGCACTCAAATTCAGCATATCCCAAACAAATAATCTGACTTTCCGTTTGCCCTCCAACTTTGATGCCTCTTTTCCTTTTAACATTGTATTTCTTGACTCAAAATGGCATCAGTAATCTTACCGGGGTCCCAAGCCAGAAATCTAGGCCACTGTTTGAGTCTTTCTCTGTTCTCCAACACCTCAGTCTAGTCAGTCATCAAGTTCTTTTTATTTTACTACCTTGATATTTTCACATAACTTTCAGAATATAGGTTAGACCTCATGGCCTGCCATTTCAAGTCTGTCCCATGTCCACCTCTTTAATTTTCTTTTCCTTCATTCTCCCTCATAATTCCTCACTCTGCCTGCCCACTCCTCCCTGTTAGTCACTTGGCGGGCCCCTTTGAAATCCAGCTAAAGTTCCAACACCTCTGGGGACTCCTTCCGTGACACCACCACCCTACTATCTGATCCATGCCTATTTTTTGCAGTCAGTTCCATAGCATCTGTATGTACCTCTGACGCAGGGTTCTCAACCAGGGGTTATTTTACCTCTCAGGGAACATTTGGCAGTGTCTGGGATTCTTCGTTGTCACAATCCATGAGAGGAAGGGATAATCCTGGCACCTAGTTGGTAGAGGACAGAAATGTTGCCAACCCTCCTACAATGCACAGGACAGCACTCTTAAAATAAATTTTTTGGCCCAAAATGTCAGTAGTCCCAAGGTTGAGAAACCCTGCTTAACATATTTTGTTACTAGTGCTTTATATATTTTTTTCTTCTCCACTGCACAAGGGACCTTGTCTTGTTTTTGCATCCCTAAATCTTGATTCAGGGCCTTTCACATAGTAGAAGTTAAATGTTGGAAGAAAAAGAAATAAAGGAGGTAATCGCTCAACTCCAGAGATGAGCAGCCTGTCTGCTACCACAGGCTACCTGATAATTTCAGTGATTTTTCTCCCCATTACCTTTCTTTAATGTTGCCTTTCAAGGATGCTTCAACTTGTCTATTTTTCATTTGTTTATTCAGCAACTGATTTATTTTTAAAATATTATATTGATTTTTCTTTATTCAGCATCAGTTGGCTGTCTTCTGTCCATGTATCTTGGCCACTTATGAAGTGGTAAAAGATAATTAGCTAGCTTTCAGAAAAATAAACCAAATAGGCCTATTCTTATCAGAGGTTGGTTGTTCAAAACTCTGCAG
Seq C2 exon
ACCATAATGACTTCAGCAAATAAAGCAATCGAATTACAACTACAAGTGAAACAAAATGCAGAAGAATTACAAGACTTTATGCGGGATTTAGAAAACTGGGAAAAAGACATTAAACAAAAGGATATGGAACTAAGAAGACAGAATGGTGTTCCTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005175:ENST00000005386:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.745
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development