HsaINT0144184 @ hg19
Intron Retention
Gene
ENSG00000186350 | RXRA
Description
retinoid X receptor, alpha [Source:HGNC Symbol;Acc:10477]
Coordinates
chr9:137313522-137321086:+
Coord C1 exon
chr9:137313522-137313651
Coord A exon
chr9:137313652-137320953
Coord C2 exon
chr9:137320954-137321086
Length
7302 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACTGTGTGCCTCCTCCCCAGGCT
3' ss Score
9.72
Exon sequences
Seq C1 exon
CCGAACGACCCTGTCACCAACATTTGCCAAGCAGCCGACAAACAGCTTTTCACCCTGGTGGAGTGGGCCAAGCGGATCCCACACTTCTCAGAGCTGCCCCTGGACGACCAGGTCATCCTGCTGCGGGCAG
Seq A exon
GTGAGTGGCGAGGCCTAGGTGGGGATGGGGATGCCATGCAGATGGGACACGTACCAGGACACTCCCCCCTCCCGGGATACTCCGCACTCCCGGGACACTCCCCTGTCCTGGGACACTCCCCCCTCCCAGGACCCACTCCTACCTCCCGGGACACTCCCCTCTCCTGGGACACACTCCTACCTCCCGGGACACTCCCCCTTCCCGGAACACACTCCCCCCTCCCTGGATGCTCCCATCTCCCAGGACGCTCCCCTCTCCCAGGACGCTCCCCTCTCCCAGGACACTCCCGACTCCTGGGACACACTTCTACCTCCCGGGACACTCCCCACTCCTGGGACACACTTCCCCCTCCTGGGACACACTTCCCCCTCCTGGGACACACTTCCCCCTCCAGGGACACACTTCCCCCTCCTGGGACATACTCCCCACTCCTGGGATGCTCCCATCTCCCAGGACGCTCCCCGCTCCCAGGACACACTCCTACTTCCTGGGACGCTCCCCTTTCCCGGGACACTCCCCACTCCTGGGACACTACCCCCTCCCGGGACACACTCCCCGCTACCGGGACACTCCCCCCTCCCGGGACACTCCCCCGTCCCGTGACATTCCACTCTCCCTGGACGCTCCCCTCTCCCTAGACACTCCCTACTCCCGGGACACACTCCCTGCTACCGGGACACTCCCCCCTCCCAGGACACTCCCCTCTCCCGGGACACTCCCCCCTTCCGGGACACTCCCCCCTCCTGGGACAGTCCCCACTCCCGGGACACTCCCCTCTCCCGGGACACTCCCCGCTCCCAGGACGCTCCCCACTCCCGGGACACTCCCCTCTCCCCGGACACTCCCCACTCCCCGGACACTCCCCACTCCCGGGACACTCCCCCGTCCTGGGACCTCCTATGTACTCTATGGGACTGTTGGGGGAAGGGCCTGGGGCCTCAGTTTCCCTCCATCCCTCATAAGGAGGTGTACCATGCGGGGTCTCTCAGTGGCCTTCAGAGAGGTAATGGGCTGTCGGTGGAGGTTTGGGGGCTCTGGAGAGGGAGGCTGGCTGTGTTCCAGGGGCTGCCCAGGAGAGCCACGTGCTCTCTGCCCTTCTCCTCCCACTCCAAGGCCGCAGCTCTCTTTCCATGCGGTAATGGTGGTGCACAGAGCCACTGCACAGAAATGCCTGCTCCACGCGCATCACACTCCCCGTGATGCCATGCGGCGGCCAGGACGGTGGCTGGGAGCTCAGCTTTGGGGTTTTGGGGTCAGGTTGGCAGTGGAAGCCTGGATGGGGCAGGCCCCCCGCAAAGCTGGTCCCCCACCTGGAAAGGGGGTGTGAGGGGCGTGCTGACTGGGGCTGGTTCTTGCCGAGTCAGCCGGGGTAGCTGTGAGGCCAGGCTGTTAGTGGAGTTTCCTGCTGGTGAAGCAACACGTTGGGTGCCCAGGTCTGCCCTCACTGCCCGACGATGGTGCTGGTCACTGTCCCATGTCCCCCTGGGCCCAAGAAGCCAAGCTCCCTTAGGGCCGGGTGTCCCAGCTGCCTAGAGGCCCGCTACCGCACTGTGGGCTCCGCCGCCTCAGCCCGACTGGGGAGCCTCAGCCCATACAAGGCGGCTCCTAAGTGGCAAGTGGAGAAGACACAGCCAGAGACGGGCTCCCTGTGAAGCAGGGAATGTTCTGGAAGTTGCTTGGGTCAGGGCTGTGACCACACAGGCTGTGTGTATAGGGCCTGGCGCCGTCGCCACCCTCCTGGAAGGACTCTTCTGGCCATACTGGGCCCCGCCGGAGGAGCCAGGATAATCTCCCATCTCAAAGTCCTTGACTTAATCCCGCTGGCCTCGTGTCTGGTGGGTCCTTGCCCCTCTGGGCCTGAGGCATGTGGCTGTCTGCCGTTGCGGGCTCAGACTTCTTTCAGGGTATGGTGAGTATTCCGCCTGCCAAGGGAACCCTGCCCTTGTTTGCAGGGGCTCCCCCAGAACCCTCGGTTCAGAGCCCCTGGCTTTGCCAGCTGCAGGCCTGCCTGACCCCAGTGGTCCTTGGAGAGATAGCCAAGGCTTTTGCTGAGAGAGGGCGGTGCTCCCACCCCACCCCAACCCACCAGACCGATCCAGAGAACAGCTGGCCGCACGCAGCTCTTTTCCTGGGGATCCCAGATGGTTGTGCGCTGGGGGCCTGGCGGAGGTCCGAGTCGGGTTGGATGGCTGTGTCCGTCGCCATGTTTGTGTGGTGCCTGGCCCTGTGGTCCCATGTTCTGGCAGCTTCTGGCTCCAGCCTCAGCCTGTGTGGGGTGTTCGTGGTGGAGTGCGGTGCTGAGGGCCTGCGTGGGGTGGTCGTGGTGGAGTGCAGTGCTGAGGTTAGAGGGTTTCTGTGGCTGTCCCTCTTAGGTGGGCACCTGCCTGTGGTCTCCCTGCAGCTGTCAGGTGGGGGCTCCCCGCAAGGCCCTTCCCTTAGCCCAGAGCCCTGGTGCCATGAGTCCCCAGGCCCTTCTAGGATGCCTGGAAAGCCATCCCGTGGCATCTCTGCGAGGGTGGCCTCTGCTCCTGCCCAGCGGCTCTTTCCGGGAGATCTCTGCGGCTGCATGTCTCTGAGTGGGACTCCCAGCCTGACCTCCCCCTGGGCGCCCACTGAGGTCCTTGCTGACCTGTCTCCAGTGGGCCCTGCTCATGCATGCTTCTGGCTTCGAGGGCCGCATGGTGAGGTCTGAAGCTGCATTTCCGGCATGAGTCCCAGCCCCACTACCCACGAGCAGCTGACCTTGGCTGAGTCACTTACTCTCTGTGCCTCAGTGTCCTTGTGTGTTCTGTCTGCCGGGGCCAGCAGCTCACCCATCAGGTGGTCTCCCCAAGCCCCAGTAAGGTCCACTGAAGCACACGTCCAATTCAGATGTGGAACACTGGAGTTTGAAGCCTGCACTGGCCAGGTGGCTGGAGAGGACCTGGGTTAACTCCAAGGATACACTGTGCCTGGCTGGTGTTGGCTGAAGGACTCTGTCCCCCTCCAGGGGGCTCAGGTCAGGATCCATGGCTGTAGCCTGACTGGGGACCAGGGGTGATCCTGCTGGGTTTTCTTCTGGCAGGAGGCAGTGGCAGAGGTGAGGCCCCGCCCAGCTCCGGCAGGTGCCAGGGCCACTGAGTGCTCCCCCATTATGTCCCTGTGCTAGGCCCTCCCACTGTGTTCCCAGTGCTGGTGGGGGAGGTCACTTCCGCTGGGCGACAGCAACGATGGGAATGGGTGCCCAGACCTGCAATTCCCACCATCGTGAGAGCCATTGGCCATGCAGGTTCAAGGCCCAAGGTCTCTGCTCACTCCGGGGAGTGTCCACCTGTGGCTCGCGGTGACACTGAGTGGGGGTGCAGTGGCCACAGCCCTGCAGGGGCCCAGAAACTGGTGGAGGATTCCAGCCAGGCTGTGGGAGGTTGATGTCACACGTGTCTGCTCCTGTGGGGTAGGGCCCCTTCCTTGGGGTGGGCTGCTGCCCTACCCGTCCAGGAGGCCTTCAGAAATAAAGCATTAAAATGAAGAGTTTTGGCTTGTTCCATGGAAGCTCTGGGTCACACCCTGACCCTTGTGTTTGTCAGATGAGTAAACTGAGACAGGGCCGGGTCGCTCACAGCTTTCAGGTTTCTCCGTCCAACCTCCTTCCCACCTGCCCCCTTCATCCCAGGCTGTTGCTTTCCAAGGCCGTGTTAGCTGCTCCAGCGGGGTCGTCTGAGGGCCTGGGTTGCACAGGCACCTCCTGCGTGGCGGCAGGGTGGGGGGTGGGGGGGGGTGAGGGGGGTGGGGGGAATGGAAGTGGGCGGGCCTTGCTGGGCTGGGAGGGAGGGAGGGAGGGGCCAGGCTTAGGTAGCAGGCCCAAGGTCCCCCTGTGGGGACAGCACACCACTTTACTCCCCTGGTCTTGTTAATCCTGCCCACATCTCTGGCCCCAGAACACAGGGTAAGCCAGGCTGGGCTCTTGTCACTGCCGCCCTGGGACGGGATCCCCATCACAAGCCCCATGGGGACAGCAGCCGTGACTCTGGGGGGGCCCTGCCCTGCCTTGTGAGTGTGGACTCATTTAACTCTCCAGACCACCAGGAGTCGGTGTTATTACTGTCCCTTGTGCTGCGGAAGTGGTGGCTCAGAGGTGAGACAGGAACGTGGCTGAGCCAGGTTGGAGCCCGAGGCCCCAGCTTCCCCACCTGACCCTTGACTCTGTGCTGTTCCTTCCGGAAGCGCTGTCCAGGGGTCCTGCAACCCCAGCAGAGGCCCTGAGCGTTTGGGCAGGGCCACGAGGGATCTGCAGGAGTAAGTTCCTTGGGAAGGGCCAGCCTCTTGAGTTGGAGGACATAGTGACCAAGGGAGCAGCCCCAGGCAAGACTCTTTGTCCTGCGCTTGGAGCCTGGAGTAAGACCTGGTATCCTCTGCATCACTGAGGTCCTCCTTCTGAAAGGCCAGCGCACCCTGAGCCGTTTAAAGCTGTGTCCGTGCCGGGCCCCCACATCACAGGGCCAGGAGCCCTCCTTCCTGCAGCGATGGAGCACTTAGGAAGGTGAAGACACCCCAAAGGTTACTGTAAAGTGGGTTCCTCTCCTATTTTTCTCTTACATCCGAGAAGGAGGAGGGCAGCTTACAAAGGTGTGTGGGGCAGGAGAGGAGAAATAACCGAGTGAGGACATCGGGGTGGAGGGACAGGGGACAGGGGAGCTGAGATGCAGCCGGCGTGCCGGAGGGTGCAGAGAGAGACTCCGCACTGTTCTGTCCGTGTGTCTGGGCTCCTGACCTGTATCCCGTGCTGAGGGCCGCACCTCGGCTCAGCAGCGCCTTCTGACCCCAGCCGTGCACTAGGCCCCTCTGCTGGGCACACCAGAGTTTCAGAGGCGAGTCTACCCTGGTGCCTGCTGGGTGGCCTCAGGGGCTCTCGGGGCAGTGGGAGGGGAGGTGGCCACTGCTCAGGTAAACCCCCAGGCCTGCAGGATGTGAGGGAGAGAGGCAGGCCCGAGAGGCCAGGACTGGCCAGGGATGGTGGGTTTGGGGCCAGTTGTGCCCCAGCCCAGATCTTGTCCTCGGCCCCCTGGGTCCCTGCCCTTGGCCACAGGAAGTCTGTCCACACTGGGCCTGGTGTGGGAAGGGAGGGAGAGCCCTTTCCTAGGAGAGCATTTGCTCTCACTGGATGTCAGACCCAGTGCCTCTCAGCCTGGGAAAACCTGACGGGCTGAGCCGTAGGAGGGGCAGGAGTGGGAGTGGGCCCGGGGCTCCTGTCCAAGTCTCTGTGTGATTTGGGGCAAACCCTTCCCCTCCCTGGGCCACAGATTACCCACATGTCAGATTGAGGGGGCCTCTTCTAGATTAGACTTCTCCCAAATGTGATGCTACAGATGTTTCATTGGGCAAAAACAAAAAAAAAAAAAAGAGGGTTCTGTGGTCAAAGAAAATCTGGCTGGGCAGTGTGGAAGCTGTTTTCGCGGCTGGCTCGGCTGAGCCCTGGGATGCCACTGCATGCTGCGGCCTTGGTTGTGTTTCCTAAACCCCCGCCCCGGGGGACCCCACTCTTCTTACTCCCCATCGCAACGGGCTGCCTGCTGCCACCTGGCAGGGAGAGGGGATGCATGACAGGCGGGGAGGTGCCAGTCCCGAGTCTGTGACGGTATTTCCAGCCCTGGCTTTTCCATCAGACCGCCCGTGGTGCCGTCTGCATGCTCCCACGGTGATGGGGCACAGACCCCACCGTTCCTCCCTCATTTTGGTTGCACAGCCTGGGGCCAGTTGGGTGCCATCCCTGCCTGGTCTGTCAGCACACCTGGGCGGGGCGGCCTCGGGGGTGGGAACTCCCTCCTGGGGCCCTGGGATTACTCAGTTGTGAAATGGGGAGAATGGGGACGGTGACACCTGCCCCCGGGTTCCCCATGACAGGGTGGGTATGTGCTGGGAGGGTGTGGAGGGCCGAGCCGGAGCTGGCACGGTGGTCCCCACCAACTTCTTGCTGATCACTTACCCCCTCATGCCTCAGTTTCCCCCTCTGTAAAACAAAGTTAATGCCAGTTTTCCAGGATTACAGTTGGGATTAAGTGGGAAATTAATGACAGTGTCGGCCATAGAGGCTGGAGCCTCTAGAGCGCTCAGGGAGTGTGGAAGGTGCTGAAGGTGACTGTGTGACTGCAGGTGACTCCATGTCACCCTGTCTATAAGAGCTGTTAAAACAGCAGTGCGTGTGTGCGCGAGGGTCCCTGACTGTGTGACTGCAGGTGATTCCACGTCACCCGGTCTCCAGGAGCCCTTAAAACAGCAGTGCGTGTGCACGCGAGGGTCCCTGTTTCTTCCTCCCCGATGCCTGCTCTGCTTCATCTGCACTGGAACCTCATGTTGAGGGGCTGCTGTTACCTAACTGTCTGCCCCCCAGGGAACCCCCACTATGTTGAGAGGCTGCTGTTACCTAACCACCCGCCCCAGGGAACCCCCACTGTGTTGAGGGGCTGCTGTTACCTAACCACCTGACCCCCAGGGAACCCCCACTATGTTGAGGGGCTGCTGTTACCTAACTGTCCCCCAGGGAACCCCCTGATGTTGAGGGGCTGCTGTTACCTAACTGTCTGCCCCCCAGGGAACCCCCACTATGTTGAGAGGCTGCTGTTACCTAACCACCCGCCCCAGGGAACCCCCACTATGTTGAGGGGCTGCTGTTACCTAACCACCCACCCCCCAGGGAACCCCCCGATGTTGAGGGGCTGCTGTTACCTAACCACCCGCCCCAGGGAACCCCCACTATGTTGAGGGGCTGCTGTTACCTAACCACCCGCCCCAGGGAACCCCCACTATGTTGAGGGGCTGCTGTTACCTAACCTTCCCCCCTGGGAATCCCCCCGAAAGAGGCTGCGGCTCTCACGCACCTGCCTTCAGTTGGATAACCTGCTGTTTGGTGGCATTCCACGAAGGGCACACAGATCCCCGAGAGTCCTGGGACCCTGCTGGCAGCAGTGGTTCTGGGGCCATCCTGGGAACATCCCTGGGTGCTCTCCCACGTGCTCCGTGGCAGGAGTGTCCTGCACACGCGGGAGGAAGCTTCTGGGGCACATGAGTTTGTGAGCTCCCGGGTTCCACAAAGCTCAAGGGACTTTGTGTGGGACTTCTCAGGGCCTTTCGTGTGCCGGTGTGTACTGTAGAACGGGCATTCTCAGGAACCTCTTTTCTGTGGAACACTTCATGGGATTGGGGTTCCAGAGCCTGTCAGGATGGGTCGGTGACATGCTGCCTCTGTAGGGTCCCACCAGGGGCTGGGGAAGGGGCGAGCCCCGTGGGGCCTGGAGACAGCTGAGTGACTGTGTGCCTCCTCCCCAG
Seq C2 exon
GCTGGAATGAGCTGCTCATCGCCTCCTTCTCCCACCGCTCCATCGCCGTGAAGGACGGGATCCTCCTGGCCACCGGGCTGCACGTCCACCGGAACAGCGCCCACAGCGCAGGGGTGGGCGCCATCTTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186350-RXRA:NM_002957:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(22.4=100)
A:
NA
C2:
PF0010425=Hormone_recep=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)