HsaINT0144186 @ hg38
Intron Retention
Gene
ENSG00000186350 | RXRA
Description
retinoid X receptor alpha [Source:HGNC Symbol;Acc:HGNC:10477]
Coordinates
chr9:134431905-134434207:+
Coord C1 exon
chr9:134431905-134431996
Coord A exon
chr9:134431997-134434101
Coord C2 exon
chr9:134434102-134434207
Length
2105 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGG
5' ss Score
7.13
3' ss Seq
CTGTGGCTTCTTCCTTTCAGACT
3' ss Score
10.03
Exon sequences
Seq C1 exon
GGTGCTGACGGAGCTTGTGTCCAAGATGCGGGACATGCAGATGGACAAGACGGAGCTGGGCTGCCTGCGCGCCATCGTCCTCTTTAACCCTG
Seq A exon
GTATGGCCTTCCTGCCTTGAGGCTTCTGGCCCCGTTCTCTGGTGGGGCAGAGGTGCCTGGGCCTCCTCCTGGCTGTACTTCTTGCCTCTGGCTACATGTGGGGCCAACTCCCACCCTCCTTGAGCTCAGTGTGCCCCCCTCCCAGTGAAAGTGTGGCCATGCTGCCTTCTGCTCACCTTGAGGGCCAGCCAAGGGGGCATGGTCCCTGGGCACAGGGGGACCCAGCAAGGCAGTTGTCATGAGGGGCTTGGTGGTGCCGTCTGGGCTCCGCGGTTCATAGTGTTCATCACTGTGCGTCGGAATCCAGACTCCGAAAGTGGCCAGCTGTGGTTGTGAACTTCCGGTGCTGAAGTTCAGGAGTCCCAAGCCCTGCAGGCTGGGGATGGGTCAGGCCTGCCGGGTGTTCCAGAGGGGACCAACCTCATCCCCAAGCCTCGGGTCCAGGGTGTTTCTGGGGCTGGGCCCCTGTGGTTGAGGAGAGCAGGGCTTGGGGCTGTGGGGCTGGGGCTGGGCACAGGCCTCCTGGCCGACAGTGCGGCCCTTCTCCAGCCTCTGGGTTCTCGGCTTGAAAAGCCTCCTAGGTGCTACTCCTTCGCCCAACAAGTGCTGACACGTGCCTGTTTGCTCGGTGCCCTGCTGGCATGGGAGGGCCCCTTCAAGCTGCTGGATAGGGCTTGCCTGCCTAGAGCTTGGGGTTTAGAGGGTCACGCCCACCAGCAGGCACCCCCGGCACGTGAGGGCAGGAGCACGGTTGGTCGAGGGTGCGGGCCACTTCCTCCGGGAGCTGCAAGTTAGGGGCCAGGGGAGTGAGAGGCACGGAGGTGGGGTGGGCTGGTGGAGGCAGCCCAGGCAGGGCCTTGAAAGTCTTGCTAAGTTTGGGTTTTTTCTTGGGGCCACAGGGAGCCAAGTCCTGAGGGGTTCCAGCCGGGAGGGAGCTATGGGTTTCTGTGTTTGGAAACTCAGCTCATTGCGTGATAGGGGCAGGTGGCTGGGGTGTGGAGGGAGAGGTTTGGGGCTGCTGTGGGGAGCTCACTTGGGCTATGGTGGAGGGAGTGGAGCCCTCTCGGCTCCTGGCCCTGACCTTCTGACCTTGCCCTTTGTCAGACCTGGCTCTGAGGGACCGGGCCGGGATGGAGATGGGCATCTTCTTGTGGGGAGAGCTTGTTTCCAGGGTCATTTTATCACCCAGGCTGTGCATCCGGGCCGTAATCCTGCCAGCTCGGAGGCTGAGTCATGCCACGGCCCGGCCCGGCCCGAGGAATCCCCATTCAGGTCCTGTGTGGTCTGGTTGCTAGAGCTGGGGCACCAGCAGGACCTGGGCACCGGCTTGCAGGGAGGGTGAGATTGTCTGGCACAAGCAGGGTCCAGGCACAGGCTTGCAGGGAAAGCGAAGAGACCAGGGCACAGGCATGCAGGGAGGGCGAGGAGACTGGCTGGAGCGGAGGCAGCTGGGGGAGCCAGGTACGTTGCCAAGGAGCCCAGGACACAGGCCAAGGTGGCATTCACAGGGGGTCCCTGGGCCTTGGGGGCCAAGGTGGCATTCACAGGGGGTCCCTGGGCCTTGGAGGTTTTGGTGGCTGCAATCTTAGCCTCTCTGTCCACTCTAGGCTCTTGAGCCCGGGTCCTGAGCTCAGGACTCCGCAAGCACACCGAGGATGGGTTTCCGCAGGGTCTGGGTACTCCTGGGGGCAGCAGCGCTATCTCCCATCCATGTTATGGGGCTGGGACCCAAGGGCAGCAGCAGCATCCATTGTCTCTCCCAGTTCCCAAGGCGGCTGGAAGGAAGGCAGCAGATCCCTGACACTTTATCGATGGGGAAACCGAGTCTCTGGAGGTCAAATAGTTGACCCAAGGTCACGTGGCTGGCAAGTGGCAGAGCTGAGCCTGGACCCAGAGCAGCCTGGCCTGGCCGTGGGTTCCACAGTCGTCCCCCTGCCACCAGGCTCTGGGGGAGCGGGCGGAGGCATGTCCAGCGGCATTCCTCCACCACCTGCTCTGCCCATGGTGGGGCAGCCTGGGAGACCCCACACAAGCCTGGGTCCTGGGGGCAGGTGCCCGAGACACGCCCCAGCTGAGGGTTCTGACCTGTGGCTTCTTCCTTTCAG
Seq C2 exon
ACTCCAAGGGGCTCTCGAACCCGGCCGAGGTGGAGGCGCTGAGGGAGAAGGTCTATGCGTCCTTGGAGGCCTACTGCAAGCACAAGTACCCAGAGCAGCCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186350:ENST00000356384:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(16.1=100)
A:
NA
C2:
PF0010425=Hormone_recep=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development