HsaINT0144187 @ hg19
Intron Retention
Gene
ENSG00000186350 | RXRA
Description
retinoid X receptor, alpha [Source:HGNC Symbol;Acc:10477]
Coordinates
chr9:137325948-137332431:+
Coord C1 exon
chr9:137325948-137326053
Coord A exon
chr9:137326054-137328312
Coord C2 exon
chr9:137328313-137332431
Length
2259 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACCAGACCTGTTCCCTGCAGGTT
3' ss Score
8.48
Exon sequences
Seq C1 exon
ACTCCAAGGGGCTCTCGAACCCGGCCGAGGTGGAGGCGCTGAGGGAGAAGGTCTATGCGTCCTTGGAGGCCTACTGCAAGCACAAGTACCCAGAGCAGCCGGGAAG
Seq A exon
GTGGGTCCCGCCCCGTCCCACACACACCCCAGACCCAGGCTCTTGTCTCCAGAGCCCCCACCCCCTGCAAGGCCATTTTATGTGAATGAGAAGGTGGCACCCTCCCCAGGCCCAGCCCATGCCAGCAGGTCCTGAGCAGGCAGCAGGAGGTCCTCCAGGCCAGTGGGCTGTGGCGGGCACACCCCACAGGCCCACGTCGTATCCCCACTGGAAGGATTACCTTGCACCTGGCGCATAGTAGGTGCTTCTCTTTGTTCAGTAGATAGATGAAGGCTGTGCTTCACCCCCCACTGCGCTCCCCTACCAAGCAGAACCACCAGAGGCCAGGCGACACCAGCACATAGTAGGTACTTCACAAGCATGTGTAGAATGGATGGCCAGATGCCCACACATACTAAACACTCTCTACAAGTGTGTACGGAATAGGCGGTCACGGCCTGAGCGTAGCGCTCATGTTTCCCCCCTGCCCGGCTGTGGGCCCTGGAAGGGCTGGGGCTCCCTCATTTCTGAGTCCACAGTGCTGGGTGCACAGTAGGTGTCCAGGAAGAGAAACGTTTGTGGATCCCTGCCTGGGATTCAAAGTCAGCGCTCCAGATTCTGCCTCTTCTCTCTAAAGGGGCATCTCCTGGCCTCTTGATCCTCAGACTGTGGGGCGGGGAGGGGGTCGGGGGAGGTGGGGCCCAGCAGACCTCATAGGACACCCAGGCCTTCCCGCCACCAGCACATACACAGTTAACCGTGTCCCCGCTGCCTGCCCAGCCCTCATCTGGCTTGGTTTAAAGTGAAACTTCCCGGAGGACGAGGACAGGAGGGGGTGGCAGGCAGCTTGTTTTTCCTGGCTTTCTGCCCTGGCCCATCTCGCCAGCTCAGCAGAAAACAGCTTGTTCTCTGGCCCAACTCCAGCCTCTGCGCTGTTTTTGCCTTTAAAACAAGGCCTGTGAGGCAGCCAACCACAGAGCTTTTCCCTGAAAGAAAGACTTCGTTAATAATTAATGAGGTCCTGCAGCCCCTGGAGGGGCCGTGTGGAGAGACTCAGGCCGTGCACAGGGGCCCTGGGCAGACACGGCCAGCCGGAAGGGACACCTGGTTCCGTCCCCATAGCACCCTGTCCTCAGCGGCAGCTGCTGCCCTCATGCCTGGCCCTGCTATCCCTCTTCCCAGAGCCCCAGACTTCCCCCCTCCCTCCCGCCCCCCCACTGGTCCCTGCCCCAGGAAACTCCCCAGGGATGGGCCAGGCCCTGAGGACCAACCCGTGCTCCCTCCCTCCCCGGCCAGCCTTCTCTGACCATGCTGTGCCCAATGCCAGCAGAGCTATTTCTGAGGAAGGGGTGGCCCTGGTCTGGGGCCCACAGCCCTGCACAAGGTGCCGTGGGAGGCACTCATGGGGTGCTGATGCTTTATGGAAAGGGTCTTGCACCGTTACACAGCTCCCAAGTCAGGCCTGGCTCCACCTGCAGTGGGGGTGCAGCCTGACTCCCCCTCCCCCGCCTGATGCTCTTTGACTTCTTGGTTGCCCACCATGTGCCGGGCCTGTTCCCTGCGACTCACCAGTGTGCTCAGCAGCCCTTTCCCTTACAAGCCCCGCAGTCTCTTGCTGTGATGGCTGCTGCAGCCAGATGCATTACTGATACTCACACCCGCTCCCGGCTGTCATGGCCCACAGTTTTTCATTTTTTGAGAGACAGTCTGGCTGTGTCGCCCAGGCTGGAGTGCAGTGCTGCGATCGTAGCTCATTGCAGCCTCAACCTCCTGGGCTCAAGCGGTCCTCCCTGCAGGCATGCACCACCACGCCTTGCTACTGTTTTTCTCTTTTTCTTTTGTAGAGACAGGGTCTCACTGCGTTGCCCAGGCTGGTCTCGAACTCCTGGCCTCAAGCCATCCTCCCACCTCGGCCTCTCAAAGTGCTGAGATTACAAGTGTGAGCCATCATGCCCAACTGCCTGCAATTTTTAACTTCTTCACAAAGAGCTATTCAGTCTGCCCTAGCCAGCTGCTGTCTGGCCCCTGGCCCTTCATCTCCGTCCTCAGACCCAGGGATCTCCCTTCACTCTGTCCTGGCTCTGGGTTGCCACTGCCTCTGTTTCCTTCTAGCCTCCCCTCCTTCCTTCTGGAGGCTTGGCATAGGCAGATTCAGGGCTACAGACCAGCCTCAGAGGGGTTGGGGTATCAGACACAGCCCCATCCCCAGGGAGGCCTCCAGTGCCAGGGCAGAACTGCCCATGCCCCTTGCCCGGCCCTCACCAGACCTGTTCCCTGCAG
Seq C2 exon
GTTCGCTAAGCTCTTGCTCCGCCTGCCGGCTCTGCGCTCCATCGGGCTCAAATGCCTGGAACATCTCTTCTTCTTCAAGCTCATCGGGGACACACCCATTGACACCTTCCTTATGGAGATGCTGGAGGCGCCGCACCAAATGACTTAGGCCTGCGGGCCCATCCTTTGTGCCCACCCGTTCTGGCCACCCTGCCTGGACGCCAGCTGTTCTTCTCAGCCTGAGCCCTGTCCCTGCCCTTCTCTGCCTGGCCTGTTTGGACTTTGGGGCACAGCCTGTCACTGCTCTGCCTAAGAGATGTGTTGTCACCCTCCTTATTTCTGTTACTACTTGTCTGTGGCCCAGGGCAGTGGCTTTCCTGAGGCAGCAGCCTTCGTGGCAAGAACTAGCGTGAGCCCAGCCAGGCGCCTCCCCACCGGGCTCTCAGGACACCCTGCCACACCCCACGGGGCTTGGGCGACTACAGGGTCTTCGGGCCCCAGCCCTGGAGCTGCAGGAGTTGGGAACGGGGCTTTTGTTTCCGTTGCTGTTTATCGATGCTGGTTTTCAGAATTCCTGTGTGGCCCTCCTGTCTGGAGTGACATCTTCATCTGCTCTGAATACTGGTGCCCAGCCAGCCCGTGACAGCTTCCCCCTAATCAGGAGGGGACAGCTGGGGGCGCAAGCTGGTGTGTCATCAGCAAAGACCTCAGCCGCCTCGGGGATGAGAGGGGACTCGTGGGGCAAGCAAGCTGCCCTGTGCTCTGAGTGAGGGGGAAGGTAGCCCCTTTTTCCAAAGATAACTCACAGTTTTGCCCTCGAGCCAATGAGAACATGAGCTGCCCTCTGTGCAAGGTTTCGGGGCCACCTCCAGGCTGCAGGGGCGGGTCACTCACCCCCCTGTTTTCTCTCTGCCTTGGTGTTCTGGTTTCAGACTCCCGACTCCCCGTTCAGACCAGAGTGCCCCGGCCCCTCCCCAGCCTGAGTCTTCTCCTTGCTCTGCGGGGTGGGCTGAGGCTTGTCCTTGTTTCCTGCAGGGCTGGCCCTGGCTCGGGCAGGGTGGGGCATCACCACCTCACTGGCCTTGCTGGAGGCACAGGGCTCTGCGGACCTGCAGCCATCTGTGAGGCCCGCGGGGATGGGAGGGGAGGAGGGTGGCCTGTTGGTTTCCCTCAGAGGGGGCAGGTGGCCTGGAGAGAGAGGGGCTCAGGAACTGGGAGCCTCGTGGGTGGGGCAGATGCTCCGCGGCCTGGAGTGGCTCTGCCGGGGCATTGGTGGGACCCCTGCTCAGGCCTTCTCTCTGGCTGCCAGTTGTGTCTAAAAGACTCTTGGAATCTGAGAACCCGGAGTCGCAGCGCCCTCGGGCCTGGGCCACACGCAGGCCCTGGTGGGACCACCCAGCCTGGTATTGTCCACGGACAGCGTTGTTCACCCAGAGCCTTACTTGGGAGCCTCACTGAACGCCTGCTCTGGTTGAAGGTGGGGTGGGGGCGGGGCTTGGGGCCTCCCTGGCTCAGCCCAGTGCGGCCTGGCGCTCCTCCCGCAGGCTCTGCCCCCGGGCTCCGGTGGTGCGGGGCCCTCTCAGGTTGAACTCGCCTCTTTTGCACTGGAAGGCCCTCCCTTTGGCCTGAGTACTTTTCCCGTTCACGCCTCAGTCCCGTGGACCCAGCCTTTGTCAGTGGCAGGTGCCTGAACAGAGGGTGGATGGGGGGGATACCGGAGGGGGTCTTGTCTTCCCAGCCGCAGTCTAGGAATGATGCGGGGGGGTGGACGCCTTCTCCATAGTCTTTCCCCACCTGGAGCAGGGGCTTCCTCAGTGGTGAGGGGAGCTGCCTACAGGTTGGACCGGGAGGCAGTGGCTTGGAGAGGCAGCTTTCCAGCCTTGGTGGGGAAGAAAGTGTCCATTCTTTGCCTTCCTGGAGCTCCCAGCCAGAGCTGAGCTTAGGCACCCGAGTGGAGCCTGCAGCTGAGTCTGTGCCCGAGACAGGCTGTCAGAGATTCCAGAAGCCTCTCCTCCCCGCCGCCCTCCACCCCTGCCTTTCAGCGTTGTGGATCCCTAGAGGTGGCCCCCTGCCCGATCCACCGTCCTGAGGCAGAGTGTTGAGCCTCATACCTGTACCAGGTCCCCGGCCAGCTGGGCCCCTCCCAGGCACTGCCAGGAAGCCCCAGCTGCCCCTGGCGGGTGTGGTGGAAATGGCAGGAGGGTGCAGGTACTCTTGGGGCCCCAGCGGTGGGAGTGCAAAAGACCCAACGCCAACACCTGGTGCCTTCTGCAGCCAGCGCCCACCCATCCGTGCCCGGACCCTTGGGAATGCCCGCGGCTCCAGAGGAAAAAGCCCAGGGACGGGGCCTCCGTTGCGGGGGGTCGGCTGCTTCTTGGGAACTTTGTCGTTTCCGGCGCTGGCTGGCTGGCTGGCTGGCTGTAAAGCACTGAAGCCCCCCGGCCGCCAACCCCTGAAAGCAGAACCTGGCCTCCCTGGCCACAGCAGCCTTACCCACCGCTCTACGTGTCCCGGGCACTTCCCGCAGCCTTCCCGTCCCTTTCTCATCGGCCTTGTAGTTGTACAGTGCTGTTGGTTTGAAAAGGTGATGTGTGGGGAGTGCGGCTCATCACTGAGTAGAGAGGTAGAATTTCTATTTAACCAGACCTGTAGTAGTATTACCAATCCAGTTCAATTAAGGTGATTTTTTGTAATTATTATTATTTTGGTGGGACAATCTTTAATTTTCTAAAGATAGCACTAACATCAGCTCATTAGCCACCTGTGCCTGTCCCCGCCTTGGCCCGGCTGGATGAAGCGGCTTCCCCGCAGGGCCCCCACTTCCCAGTGGCTGCTTCCTGGGGACCCAGGGCACCCCGGCACCTTCAGGCACGCTCCTCAGCTGGTCACCTCCCGGCTTTGCCGTTCAGATGGGGCTCCTGAGGCTCAGGAGTGAAGATGCCACAGAGCCGGGCTCCCCTAGGCTGCGTCGGGCATGCTTGGAAGCTGGCCTGCCAGGACCTTCCACCCTGGGGCCTGTGTCAGCCGCCGGCCCTCCGCACCCTGGAAGCACACGGCCTCTGGGAAGGACAGCCCTGACCTTCGGTTTTCCGAGCACGGTGTTTCCCAAGAATTCTGGGCTGGCGGCCTGGTGGCAGTGCTGGAGATGACCCCGAGCCCCTCCCCGTGGGGCACCCAGGAGGGCCCTGCCGGAATGTGCAGCCTGTGGGTAGTCGGCTGGTGTCCCTGTCGTGGAGCTGGGGTGCGTGATCTGGTGCTCGTCCACGCAGGTGTGTGGTGTAAACATGTATGTGCTGTACAGAGAGACGCGTGTGGAGAGAGCCGCACACCAGCGCCACCCAGGAAAGGCGGAGCGGTTACCAGTGTTTTGTGTTTATTTTTAATCAAGACGTTTCCCCTGTTTTCCTATAAATTTGCTTCGTGTAAGCAAGTACATAAGGACCCTCCTTTGGTGAAATCCGGGTTCGAATGAATATCTCAAGGCAGGAGATGCATCTATTTTAAGATGCTTTGGAGCAGACAGCTTTAGCCGTTCCCAATCCTTAGCAATGCCTTAGCTGGGACGCATAGCTAATACTTTAGAGAGGATGACAGATCCATAAAGAGAGTAAAGATAAGAGAAAATGTCTAAAGCATCTGGAAAGGTAAAAAAAAAAAATCTATTTTTGTACAAATGTAATTTTATCCCTCATGTATACTTGGATATGGCGGGGGGAGGGCTGGGACTGTTTCGTTTCTGCTTCTAGAGATTGAGGTGAAAGCTTCGTCCGAGAAACGCCAGGACAGACGATGGCAGAGGAGAGGGCTCCTGTGACGGCGGCGAGGCTTGGGAGGAAACCGCCGCAATGGGGGTGTCTTCCCTCGGGGCAGGAGGGTGGGCCTGAGGCTTTCAAGGGTTTTCTTCCCTTTCGAGTAATTTTTAAAGCCTTGCTCTGTTGTGTCCTGTTGCCGGCTCTGGCCTTCCTGTGACTGACTGTGAAGTGGCTTCTCCGTACGATTGTCTCTGAAACATCGTGGCCTCAGGTGCCAGGGTTTGATGGACAGTAGCATTAGAATTGTGGAAAAGGAACACGCAAAGGGAGAAGTGTGAGAGGAGAAACAAAATATGAGCGTTTAAAATACATCGCCATTCAGTTCGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186350-RXRA:NM_002957:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(18.2=100)
A:
NA
C2:
PF0010425=Hormone_recep=PD(14.6=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)