HsaINT0145201 @ hg38
Intron Retention
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr11:10028452-10029875:-
Coord C1 exon
chr11:10029765-10029875
Coord A exon
chr11:10028558-10029764
Coord C2 exon
chr11:10028452-10028557
Length
1207 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GTGTTTCTCCCATTCTGCAGAAG
3' ss Score
9.41
Exon sequences
Seq C1 exon
GCTTGCCTGGGTTTGATCTATACCGTGTATGTGGACAGCCTGAATGTCTCCTTGGAAAGTCTAATTGCAAACCTTTGTGCCTGCCTTGTCCCAGCGGCTGGAGGGTCTCAG
Seq A exon
GTAAATAGAATAGAAAGAGAGGTGGAGAAGGATTGTTCCTCTTCCCCTCTCCTCCAGTTAATTTAATTTATGGAGAAAGGGAAAGAAATAATTCTTTAAATATTTTTGTTTTAAGGAAGATCCTACTTTAGTTAAGCATTGTCCCCATGGTCTGCTTTCTAGACACTCAAGATTCCATTCTTTTCTTAGGTCATGAGGTTAATTTTAACACAGGGTTCATCTTTCACATAGCATAATTAGAAGTCATATTTTGTGTAACTTGAACTGCAGTTTGTATTTTCTTGGAAATATATTAAGTTGAACTTTTAAATGTTCTCTTTTACCTTTCTCACTCCTGTATATAGTTACATCTCATTTTTATTAACCTAAATTGAAACATGTTGGAGTGATAAAAATTAGAAGATGACATTAAGAAAACTCTCAACACAGTTCTTTGTTACATTGTAACTACTTATTAATAGATTCATTTATTCTGTATGTCTTGAGATTTTCATATTTGTCTCTAAAGTAGAAAAATAAGAATCTCTGCTGCTATGATTTATTTATTGTTTCTTGGTCAACCATACTTTTAAAAGGATAGATTTTTTCCTTAAACCTTAAAAATGAATAGGTGATAATTTATTTTGCTTATTCTTATATAATATTGGGAAAGAGGACAGCCTTCTAAAAATCACATTGTCTTCAGTCTGACAAAGATCCTGCTTATAGTGGGATTGGCATTTCTTTTTCTTGCCCTTCGCCTTTTTACTTCTCTTCTATCTTTCTCATTGTCTTTTGTCTTAAATTTTTATCCTCCTTTTTTCTCTGTCTCTCTTGCTCTCTCCTCCTTCATTCTTCTACCTCTGCTCAAAGGGCAGAATATTAAATGTGAGTTTGGTCACAGATGGGTCTAAACTTGAATTGCTTTATGAGCCTTTATTAAAGTTGTTGACTTTAACATTTCATTATTTTTTAGCCAGTTATGATTATCAATGATTTTTGTGTCTTATCTCTACTAGATTTTCAACTTTCAGCCACTGAATTTTCTTATGCCACTTAAGTATACAAAGAACTTAAATGTTTTGGGATATACATTGTTGCCTTTTGTATCTGTTAATTGGATCTTACATGGTCGTTTGCTCTAAAAATGAACATCGAAGGTATTTTTATTTTTTAAAAAATGGCTGAAATCGTGTGTGTGTGTGTTTGTGTTTCTCCCATTCTGCAG
Seq C2 exon
AAGCTGTTTTCTTTGGGTGCAGGAGATAGACAGTTGATCCAGACTCCTTTACATGATAGTCTTCCTATCACGGGCACTAGTGTGGCTCTCCTGTTCCAGCAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812:ENST00000256190:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.7=100)
A:
NA
C2:
PF0214116=DENN=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGGGTTTGATCTATACCG
R:
TGGAACAGGAGAGCCACACTA
Band lengths:
206-1413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development