HsaINT0145353 @ hg38
Intron Retention
Gene
ENSG00000198794 | SCAMP5
Description
secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:HGNC:30386]
Coordinates
chr15:75012677-75016749:+
Coord C1 exon
chr15:75012677-75012805
Coord A exon
chr15:75012806-75016592
Coord C2 exon
chr15:75016593-75016749
Length
3787 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
ATGTGCTCCTGGGCCTGCAGTGA
3' ss Score
5.25
Exon sequences
Seq C1 exon
AGAAAGTGAACAACTTCCCACCATTGCCCAAATTCATCCCGCTGAAGCCATGTTTCTACCAAGACTTCGAGGCAGATATTCCTCCCCAGCATGTCAGCATGACCAAGCGCCTCTACTACCTCTGGATGT
Seq A exon
GTGAGTGCCATGGGATGGGGGTGGGCCAGGGTGGCTGGAGGAGGCAGGAAGACTGGGCGTGCTGGGCAGCGGGGTGGGGTGCCCACAGGCCTGACTGTCCTTCAGTCCCACTTGTGGCATATGCATGGACCATAAGTCTTCCCCTGCCAGGCTCCCAGAGGCTTCTTCCATGGGCCACCTCCCCGACTGGGCCTCAGTTTCCCTCAACCTCCCCCATCTAGGCCTCTCTTCCCTTCCTTCCCCTCCACCCTCCTTTCACAGAGCATCTGGACAGGGGTCCCTCTCTGCAGTGTAATCCCTGTCTTCTTGCTTCCCCTTTCCCTTCCACTGGAGTAACTTTCCAGGGAACCTCTGGGGACTGTCAGGACCTCAGGATTCTGGATTTGGAGAGGAATCCTTCCCTCAAAGCCTTATTTGTCTTGCTTTCTCTGGAAGATTGCTCAAAGAGAGGAGGATTCAGCTGGGAGTTGGGAGCTGTGGGATCAAGTTTGCCTGGTCACTGTGCTTGCCAAGCAGCAGGTTCCTCATTTGTAGGAAGAAAGTATTGGCTTGGCGATTGCTGTGGTTCCATGCAGCTCTGTGTTGGGTGGTCTATACCTGTAAGAGTCTAATGTCAGGCACAGTGGTTCACACCTGTGATCCCGGCACTTTGGGAGGCTGAGCCAGGAGGATCACTTGAGGTAAGGAGTTTAAGACCAGCCTAGGCAACACAGCAAGACCCCTGTCTCTACAGAAAATAAAAAAATTAGGCCTGTGTGGTGGCTCACACTTGTAGTCCCAGCTATTCAGGAGGCCAAGGCAGGAGGATCCAATGAGCCTAGGAGTTTGAGACCAGTATGGGCAACATAGCAATACCCCATCTCTTTAAAAAAACTAGCTGGGAATAGTGGCACATGCCTGTAGTCCTAGCTACTCAGGGGACTAAGGTGGGAGGATCACTTGAGCCCAGGAGTTCAAGGCTGCAGTGAGCTATGATCATGCTACTGCACTCCACCCTGGGTGACAGAGTAAGAGCCTGCCTCTAAAAAAATAATTAAATAATCTAGAATTCTTTATTTAGAAAACCTTAGCATCAATGTTCTAAGGTTTTAAGGCTGAGAGTGTAAAGGCCTCATTTCTGGTGATCTGTAGCAGGGGGTGGGAAAGGTGTCTTCTTGGGGGGATGGGACTTGGCTGTGCTGAGGCTAGTTAGAAGGTACCTCTTAGGCATGTGAGGGGGAGGCAAGCTGGCTATCCTGTGCTGGGTGTGAGCCCCAGGATCCCAAGATACCCGCAATGTAACTGCAGTTGGGTTCTGCTATATGTGACACTGCCCTGAGTGAGGCCTGCACTTAGCTGCCTACCTGGGCAGATGCTTGCATGTGCCGACAAGGTGGTAAAATATACTGTCTTTGCAGCAGGTCCCTCATGGCATGGTAGGAAGAGGATGGGGCAGACAGACTCAGTTTCAAGGCCTGGCTTGGCCTTTGAGTGAAGAAGGGATCTCCCACCATGTAACCTGAGAGAAGGGGGGATGGGACAGGTGTGGGTAAGTCTGTAGATGTTGGGAAGCAAATGAAGAAGTTACCTCTGATGGCTTCCATTTTTTCCATCAAATATGATGTAGTGTGGAGAGTGGGCTCACAACGAGGCCATGTTTGTCGACGGATAGTGAGGACACTCTCCAAAGAAACCCGGCCCCTAAGATTTCTGGGCCACACACAAGGTTCATTTGACATTGGCTGATGTGAATTTACAGTCTTCCTCATGGGGTCCCCTTTTTTCTTAGCAACATTCAGCTCAGGTACAGATGAGAATTATGTTCATCTAGGGTGAGTGTGGCCAGAAGGCAGGGCAGGGGAGGGAATAAGAAAATGAGTAATGAATTATGGAATCTAAGCTGGATAAGGAGAAGAGTGAAGACAGAAAGAAGCTGATGGCTAGAGAGAGAGAGGGGCTGAGCTCATGGGTATCCATTCCAGAGAGGAAGCAGAATAATTGCAGCAGAGGTGTTTGAGCAAGGGAGCTGGGGCAGGTTGGACTGGGGAGAGATGTGAACCAATATAATAGGTTAGTGTCTTTTCTATATAAAGAGCAAATAAAATCAGTTTTAACACCAAGCCTCCAGGAGATTTTGGGGCAATGAACAGGGATAGAGGAAATACAGCTGAAATGTACAGGAAGAAATGCCCACCCATGAGGGGCCCTGAGATGGGTGACACGGTGGTCAGGCCAGGCTTGTAGGTCACTGTGTCTGACCTGGGCTCTGGGAACTCAACTTCTGGGAACATCTCATCCAGAAGCTGGATTTAAGGGCTATAAATATCTCCTTAAGTCCTCACTAGGCACCCGCAGGTGCTTTACTCCCAAGGAAATGTATATAACCCTTGAGGTGCTTAAGGGTTCTATTCAGAAGACAGGACCACAGATGCCTGGCTGTTTGAGGCCACGGTTGAGCCCTCCTTCCTTTGTTTATTCAGCAGGTCTTTGTGGACTTAGCTTTGTTTTCAAGGAAGGGAGTGCCCTGATGTTAGATAATGATGTGCTGCACAGACCCGCATGTGTGTTAGTACCAGCATCACTTTTATCTGTAAATCTTTGAGGTCCCTGCTGGCCGTGACTCAGTGACACTGTGCCTCCTAGTTCAGCTAGATGAGGTGGGGACAGAGGGGGGGGGGCCTGGGTCCTGTTCTTGGGGAACTTTTAGTCTGGTTGATGGGCTGGGATTTATATCTGGGGAACCTTGAGAGCAGCCCAGGTCTGTAGAAGGTCAGAGGGATGGGAGATGATGAGGTTGCAGTAGCAAAGGAAGACTTCTTCAAGGAGCTGGCATGAGTGTTATCTAAGAAATAGATTAGATAGCTGGGCACTGTGACTCACACCTATAATCCGGCACTGTGGGAGGCCAAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACTTGGCGAAAAACCATCTCTGCTAAAAATACAAAAATTAGCTGGGCGTGATGGCAGGCACCTGTAATCCCAGCTACTCAGGAGGCTGAAGCAGGAGAATCGCTTGAACCTGAGAAGTGGAGGTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAAATTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAAATAGATTAGATAAAGACTGAGATTCCAGCCGCCAATGCCTGCCCCATTTAAGTGCAAGGTAGATGGCACAATGGCTAGAAGAGATGTTTCCACAAGGCCTTTTATTTTTCCCTTTCCATGCCCATATCTCGAAAGAGAAAGTGTAAGGTCGGTTTCCCATGTCTTGGGCTTGGTGATTGCTGTGAGTCTGGGAGGGTCAGGGGCTGAAGCCATTCTTGACAAGGACAAGAGCATTTCTACCACCCTGAGGCTTTGGGGCCCTTCAAAGGGGCTTGCTGGGCAGAAGCTCTGGGTTCTGGAGGCTGTGCTCTCCAGATTTCTCAGGAGTGGGTGCTGGGGTTGAGGGGTGGGGGTTGGTTCGAGCTCCCAGCTTGCGTTCTTACAGTCTTTACTCCTCTGCGTGTGTATGTGTGTCTCCTGTGTCTCTGTATGTATTTGTTGGTACGGGTTGTGGGTCTTTTGTGTGGGTGTGAATCTGTGAATGTGTCTGCATCTCTCTGTGCTTGTCTGCGCTGTTGGCCTGGCTTGATTGTGGGTCTCTGTTGCGTTACTGGTGTGTGTGTGCCCATGTCCGGGTGCTCATGTGTCTCTCTATGGGCCTGGGTGTCTGTCTCTATGTGTGCATGTGCTCCTGGGCCTGCAG
Seq C2 exon
TGAACAGCGTCACGCTGGCCGTGAACCTGGTGGGCTGTCTCGCGTGGCTGATCGGAGGCGGGGGAGCCACCAACTTTGGCCTCGCCTTTCTCTGGCTCATCCTCTTCACACCCTGCTCCTACGTCTGCTGGTTTCGGCCCATTTACAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198794:ENST00000425597:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.7=95.5)
A:
NA
C2:
PF041448=SCAMP=PD(34.8=92.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development