HsaINT0147314 @ hg38
Intron Retention
Gene
ENSG00000010319 | SEMA3G
Description
semaphorin 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr3:52440934-52441409:-
Coord C1 exon
chr3:52441264-52441409
Coord A exon
chr3:52441049-52441263
Coord C2 exon
chr3:52440934-52441048
Length
215 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
TCTGGCCCCTTATCCTGCAGAAT
3' ss Score
10.91
Exon sequences
Seq C1 exon
ACCCCCGGTTTGTGATGGCCGCCCGGATCCCTGAGAACTCTGACCAGGACAATGACAAGGTGTACTTCTTCTTCTCGGAGACGGTCCCCTCGCCCGATGGTGGCTCGAACCATGTCACTGTCAGCCGCGTGGGCCGCGTCTGCGTG
Seq A exon
GTAAGAGCTGGGAAGGGGTGGTGAGGTTCAAGTCCCTGCTACACCCTCCCATTCCCAGACCTTTCTCCCCCCACCCCTGGCCAGCAGTAGGGAAACTGAGGCAAGGATGCAAAGCTGACATGCATACCTCTCCCCGAGTGGGTGAGGGTAGAAGAGTGGATGGTGGGACCCATCCTCGTGGGGCCCAAGCGTGACTCTGGCCCCTTATCCTGCAG
Seq C2 exon
AATGATGCTGGGGGCCAGCGGGTGCTGGTGAACAAATGGAGCACTTTCCTCAAGGCCAGGCTGGTCTGCTCGGTGCCCGGCCCTGGTGGTGCCGAGACCCACTTTGACCAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010319:ENST00000231721:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.8=100)
A:
NA
C2:
PF0140314=Sema=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCGGTTTGTGATGGC
R:
CTAGCTGGTCAAAGTGGGTCT
Band lengths:
260-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development