HsaINT0148231 @ hg19
Intron Retention
Gene
ENSG00000119335 | SET
Description
SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]
Coordinates
chr9:131455147-131456087:+
Coord C1 exon
chr9:131455147-131455260
Coord A exon
chr9:131455261-131455916
Coord C2 exon
chr9:131455917-131456087
Length
656 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CTCTTCCGGTATTCATTTAGGAT
3' ss Score
8.63
Exon sequences
Seq C1 exon
TATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAATGAGAGTGGTGATCCATCTTCGAAGTCCACCGAAATCAAATGGAAATCTGGAAAG
Seq A exon
GTATGTTTTGAGGAATTATTTGACAAAAATAGCATTTTGCCTATTTCAGTTTAGTTTTAACCACTTACAAGTGCTTGATACTTTGGTCATGTGGCTAAATACAAAACCTTAAAATATAAAACGTTCCAGTGTGCTGAAGCCAAGTATTACAGTAGTTTAGGGTTCTCATTAGATACTACAGATGTAGGCAGGAAGATCTCTTGAGCCTAGGAGTTTACCCTGGGCAACATAGACCCTTACCTTCCAAAAAACAAAAAAAAAGAGAAAAATCTAGCCCAAGTTTAAGAATTGAGAACTGGACTAAATTTTTTGTTGCTGTTGTTTTCTGCAGTGGTGACTGAGCTCTTCAAATGGCTTGCCATTTCTCAAAATCATTTACATCCGTATTTAGGTAGTAAGACATAGTTTAGATATTTATACTGTGTTGTGCTAGTGGCTGTTAACAGTGGAACTAATTTTATGGAAAACCAAATGTAGTTGATACTACCTCTACCTGCTGCACAGTTTTATAATTGCTCTTAGGTAATAATGGTAGCGTAGATAGTATACTGATATTTGTTTTGCTTAGCTTTTGGGGAAAATCTTATTTTTTAAATTATAGGGAGTTTGGGTGTTATGGAGAGATTGTATCAAAAGCTCTTCCGGTATTCATTTAG
Seq C2 exon
GATTTGACGAAACGTTCGAGTCAAACGCAGAATAAAGCCAGCAGGAAGAGGCAGCATGAGGAACCAGAGAGCTTCTTTACCTGGTTTACTGACCATTCTGATGCAGGTGCTGATGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCCAAACCCATTACAGTACTACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119335-SET:NM_001122821:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=0.947
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(18.9=100)
A:
NA
C2:
PF0095613=NAP=FE(28.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTTCTCTCCAAAGAATTTCATCT
R:
AAGTAGTACTGTAATGGGTTTGGCC
Band lengths:
254-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)