HsaINT0151875 @ hg19
Intron Retention
Gene
ENSG00000181240 | SLC25A41
Description
solute carrier family 25, member 41 [Source:HGNC Symbol;Acc:28533]
Coordinates
chr19:6427345-6429842:-
Coord C1 exon
chr19:6429735-6429842
Coord A exon
chr19:6427513-6429734
Coord C2 exon
chr19:6427345-6427512
Length
2222 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTGTTCCCCGCCATCCTCAGGTG
3' ss Score
9.53
Exon sequences
Seq C1 exon
TGCAAGAATTACTTCTGTGGAATACAAGGGTCCCCGCCCTTCCAGGAGCGTCTCCTTGCTGGCTCCCTGGCTGTGGCCATCTCCCAGACCCTCATCAACCCCATGGAG
Seq A exon
GTAAGAGAGCATGTGCCCCGCAGGTGAGGAAACGCCGTGGAAACTAGTTACCCACGTTGCTGGGGCTACTTCCTCTTCCTCCTTTCTCCCCTCCTCCTTTCTCCTCCTTTTTTCTCACACTTCTCCCTCCTCCCCGTTCACCTCTTCCTCCTCTGTCTCCCCTCCTCCTTTCTCCCTCCTCCTCTTTCCTCCTCCTTTCTCCTTCCTCCTCTCCTCCTCCTCCTTTCTCCCTCCTCCTCCCCTCCTCTTTCCTCTCCTCCTCCCCTCCTTTCTTCCTCCTCCTTCCCTCCTCCTTTCTCCCTTCTCCTCCCCTCTTCCTTTCTCCCTTCTCCTCCCCTCTTCCTTTCCTTTCTCCCTCCTCCTTTCTCCCTCCTCTCCCTCTTCCCCCTTTACCTCTTTCTCCTCCTCTCCAATCTCCTCCTCCTTTCTATAAATTTATATATGAATATATTATATATAACACATATACATATATATAACATTTTCATAAATTTATATATGTATATATTATATACAACATATATATTATATATATAACATATATATATTATATATATATTATATATATAATATATATATTATATATATATATAACATATATATAATATATATATTATATATATATGTAACATATATATAATATATATATTATATATATATATAACATATATATAATATATATATTATATATATATATATAAATTTTCAGGCCAGACACCTTGGCTCATGCCTGTAATCCCAACACTTTGGGAGACTGAGCTGGGAGGACTGCTTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAATATAGCAAGACCCCATCTTTACTGAAAACAAAAATCAGCCAGGTGTGGTGGCGCATGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGAGCACTTGAGCCCAGAAGGTCGAAGCTGCAGTGAGCTATGATGGGACACAACTGCACTCCAGCCTGGGTGATAGAGGGAGACCCTGTCTCAAAAAAAATATATATATATATATGTTTTATATATAATATACACATATATTATATACCTTACTTATTATGTAAATATATAGTACATATAACATGTATATATTATATATAACTAAATAATTTAATGTATCTAATTATATAATTACATTTATTATATACTATGTAATATAAAAATATGTCTATGCATGTTATATATAATATATGCATAATGTATAATAATACATATATAATATGTATATATACTATATATATGTATACATATATATTTTCATTTCTCATCTGTGGACCGGAAACCCTCCTTTTTTTCTTTCTTTTTCTTTTTTTTTTTTTTGAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTTGACTCACTGCTCACTGCGACCTCCACCTTCTGGGTTCAAGCGATTCTCCTGCTGGGATTACAGCTGCCTGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGCCCAGGATGGTCTCAAACTCCTGACCTCAAGTGTTCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCTACCGCACCCGACCTAGGGTTCACTCTTAATCTAACAGTTCTATGGGTTTTGAGGAATGTATAATGACTTGTATCCACCATTGTAGTATCTTACGGAGTAGTTTCACTGCCCTAGGAAGGCCCTGTTTTCTACCTATTCACTCTCTTTCTTTCCCCCCAGTGCTTGATCTTTTTGCCATAAAGTTTTGCCAGCTGTCTTCAATTTTTGAGGCTTGAGGGCATGTTTTCTCGCCTCCCTTCCCTGTTATTCTTAATCAGTTTTCCAGGCTGTTCTCCCATGTTGATGTTTCCATATACATCTTATTTTTATTTTATTGATTTTTTTGTAAAGATGGGGTCTCGCTATGTTGCCCAGGCTGGTCTCGAACTCCCGGCCTCAAGCGATCCTCCCGCCTCAGCCTCCCAAAGGGCTGGGAAGACAGACGTGAGCCTTCTTCCCTCACTCTCTTGGCCTTTGCCAGCATTTGTGCTTCAGAACTCAAAATTCAGAGAGCATTCCATGGAATCTGACAGATCCGGGTCTGAAACCCAGCTCTTTGCCTTCCTGAGCCTCATTTTCCTTGTTTGTAGGGTGGGGACAATGGCTACCCCGAGGGTCATTGACAGGATTCAATCAAATGAGCTGCCTTGTTCCCCGCCATCCTCAG
Seq C2 exon
GTGCTGAAGACGCGGTTGACCTTGCGTCGGACGGGCCAGTACAAGGGGCTGCTGGACTGCGCCAGGCAGATCTTGCAGCGAGAGGGCACCCGCGCCCTTTACCGCGGCTACCTGCCCAATATGCTCGGCATCATCCCCTATGCCTGCACCGACCTGGCTGTCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181240-SLC25A41:NM_173637:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(7.5=19.4),PF0015322=Mito_carr=PU(28.0=72.2)
A:
NA
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)