HsaINT0152503 @ hg19
Intron Retention
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:HGNC Symbol;Acc:11019]
Coordinates
chr5:176813424-176814874:+
Coord C1 exon
chr5:176813424-176813567
Coord A exon
chr5:176813568-176814762
Coord C2 exon
chr5:176814763-176814874
Length
1195 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
GACGTCTTCTCTTCTACCAGTGC
3' ss Score
8.42
Exon sequences
Seq C1 exon
GGAAGGTGGCTGGTGACATCTTCAAGGATAACGCCATCCTGTCCAACCCGGTGGCCGGGCTGGTGGTGGGGATCCTGGTGACCGTGCTGGTGCAGAGCTCCAGCACCTCCACATCCATCATCGTCAGCATGGTCTCCTCTGGCT
Seq A exon
GTGAGTTGGCCCACCAGGGTGGGGAAGAGCTTGGAGGGGCACCCCAGGAGCTGGGAAGGGTGGCAAATGGGGAGCGTGACCCCAGTAAGGCTGGCCTCCATTCAGCTTGACTCCTGTATCAGCCAGGGACATGAGAGGAGCCCAACTGTAGCTGTATGTGACCCAGATGATTTATGGCAAGGAACTGGCTTCCCCGATGGTAGTTTGTCTGGGCAAGTCAGGAATCCGTAGGCCAGGGCATTGGAAGGGCAGGCGGGAACTCTCAGGTGGGCGCCGACACTGCAGTCCAGACAGGGCAGCGTTTCTCCTTTCTCAGGGAAGCCTCAGTTCTGCTTGAGGCCTTTCATTCTATTGGATTAGGCTGACCCAGGTTACCAAGGATAATCTCCTTTTCTTAAAGTCAGCTGACTGTAGACGTGAATTGCATCTACAAAACACCTTACAGAACACCCAGGCTAGTGTTGGGTTGAATAACTGGGTACCACAGCCTAGCTAAGTTGACACATAAAACTAACCATCACTGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGGGGGCAGATCACGAGGTCAGTAGATCGAGACCACCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAAAAAAACAACAAAAACCAAAAAGCATTAGCCAGGCGTGGTGGCAGGTGTCTGCAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCATGAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAACAAACAAACAAAAAAACTAACCATCACACTCTGGGGCATGTGTGCACACACAAGCACAAATCTCTATTTGCACATAGGACATGAGCCCACGAGCCCTCATAACGAAGGCCTCACACGCACACACGTTCACATCCATACACCATGTGCAGCACGTGTACATCTACTCGCATGGATGAATGCACACACCTGTAAACGCACAGCCCGTGCCCACATGCACCTGTGACGCCAACGTTAGGCAGACTCAGCAGCATGGCAGGAGCGGCCACTGGGGACTGGGACGTGGGTGGGGGGCCTGACAGGAGTTGTGGTGGTGCAGGAGCTGGGTGACCGTCAAATTCATTAGGACGTCTTCTCTTCTACCAG
Seq C2 exon
TGCTGGAGGTGAGCTCTGCCATCCCCATCATCATGGGCTCCAACATCGGCACCTCTGTCACCAACACCATCGTGGCCCTGATGCAGGCGGGGGACAGGACTGACTTCCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183-SLC34A1:NM_003052:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(33.3=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGTGGCTGGTGACATCT
R:
CCGGAAGTCAGTCCTGTCCC
Band lengths:
254-1449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)