HsaINT0152524 @ hg19
Intron Retention
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:HGNC Symbol;Acc:20305]
Coordinates
chr9:140128868-140129183:+
Coord C1 exon
chr9:140128868-140128984
Coord A exon
chr9:140128985-140129058
Coord C2 exon
chr9:140129059-140129183
Length
74 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
GTGACTCCCAGTTCCCCCAGGGG
3' ss Score
3.56
Exon sequences
Seq C1 exon
ACTTCCCCTTCCCGCTGGGCTGGCTCGGCGGCTACCTGGCCGTCCTCGCGGGCGCCGGCCTGACCTTCGCACTGCAGAGCAGCAGCGTCTTCACGGCGGCCGTCGTGCCCCTCATGG
Seq A exon
GTGAGCAGGCAGGACAGAGGCCTCGGGAACGGGGGCTCGGGCTGGGGTCCTGTGGTGACTCCCAGTTCCCCCAG
Seq C2 exon
GGGTCGGGGTGATCAGTCTGGACCGGGCGTACCCCCTCTTACTGGGCTCCAACATCGGCACCACTACCACAGCCCTGCTGGCTGCCCTGGCCAGCCCCGCAGACAGGATGCTCAGCGCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569-SLC34A3:NM_080877:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCTTCGCACTGCAGAG
R:
GCTGAGCATCCTGTCTGCG
Band lengths:
174-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)