HsaINT0152830 @ hg19
Intron Retention
Gene
ENSG00000169507 | SLC38A11
Description
solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:26836]
Coordinates
chr2:165768146-165771783:-
Coord C1 exon
chr2:165771622-165771783
Coord A exon
chr2:165768259-165771621
Coord C2 exon
chr2:165768146-165768258
Length
3363 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TATTTTATATTACTATCTAGGGG
3' ss Score
7.09
Exon sequences
Seq C1 exon
CATTTATTTGCCACCATAACTCCTTCTTAGTTTACAGTTCTCTAGAAGAACCCACAGTAGCTAAGTGGTCCCGCCTTATCCATATGTCCATCGTGATTTCTGTATTTATCTGTATATTCTTTGCTACATGTGGATACTTGACATTTACTGGCTTCACCCAAG
Seq A exon
GTAAAATGAGAGATTCAGTTATAGTGTTCATGTGCATTGGTACAGGTATACCGAATGTTCTACTCATTATTGTTACAGGTATGCCCAGTGTTCTATTTCAAAGATTACTCTCTTCCACCCATTCTCTCTACCCTCCTGCCCCCCTGCTGTCTGTTTCCTAGTTTTTACCTTTTTAAACTGCTCAATTTAGTTCTGTAGCCCATACTCTCTCCTTCCACACACTGTCACTTCCTAGCACATGATTTTTGGCTTTCCTCCACTGCAGCTTCATTTTCAAAGGTACCAGTGGCCTCCCAATCTTCAGAGCAAATAGCTTCGATTTGGATTCTCCCGAATCTCTCTGAATCACTTAACAATACTGAACTTCCTTTCTTTGCTCAAATTTTCCTCCCTTAGAGGAAAGAGTATTATTATATTATCATTGTTATTCTTTCTCTCTGTTAATTTTTTTTCTGTTTTCTTTTTCTTTACCCTCTCTAATCCCCCACTCCACTCCATCCCACACCACCCAGATAACGGGCTCAAGCATATTGTTTTCTCTTCTCTCAAAAAAATTTCCCGGTACTTTCATTGTTTTAATTCTAACCCAGACCTTTCTTTTTGTCTCCAACCTGCTGCCTGTAGGACGTTTCTACTCAGTTGTTCTATATTTGTCTTAATCACAAAACATCATGTTTCCCTTAAAACCAGACCTTTTCTTCCTCCCTCCAAAGATATTTCTCTCTTTTTTTGCATTCACCCAGGCCCAGCAACTGAGCAGTCCTCTCTTCTACTTCCCTTGACCCTTACATTCAATCATCAGTGTAGTGTAGTAGTCAGGGCAGTCCAGCAGTAGGCTGTGATTTACATATTTCACAGCTCTTGCAGGTCTATTATCTCATTGACCTTCAGACAACCCTTTGAAGGGAAGTGGAATAACTAGTTTTACCCCCTGATTAAAACACAAAGAGGTGAAGTAACTTGCTCATGCTGGCTGATGACAAACCAGAAAACAAGTCTTCTGACTCTTAAGTTCAGTTTTCTTTCCATCCTCTTTCTGCCTGCCCTGTTTTGGTCAACCATGACCCTCTGAAAGTTGTCCCTTTGCCTCTAGCTCCCATTAGCTTAGTTTTCTGAAAACCTGGGTGCTCTTGGGAGGATGGCTGCCTTATTCTGAACAGAGGTTACAGATCACTATGACTTTAGGCAAATATTTCTCAAGAAATGAAGAAAGATGGCTTCAAAAAATAATGATTAACAAAATTCAAATGCAGTCAAAAATATAATACATGCCTGTGCCACTAGAGTGCAGTAACAAAGTGACCTTGAAACTTCTGATAAGAATTGTGTTCCAAAGCATTTCTATGTATCACTATTGCTACATAGTTTGCCAATGCAAATGGCCTATGGGCTCTGGTCTGTACAGGACCTTGGTTTTTAAATGCCTTTTCTGTAAGACATAACCTTTTTTGTTAGTTACATCTTCCTGGAGTTTTTATCAGTGGTAATTGCTCAGATATAATTAAATCTTTATAAAACAAAGCTGACAGGTTTTTAATGCCGTTTTCCCCCTAGCTGTAATTCTTTAAAATACAACTTAGATTCAGGCTGCAATAAGCTGACATTGTTTCTCCAGGCCACCTCTCCTTAGGTAAATCTAGTCTAATTTGTGCATACTGCATTCTTCTTTTCTAACCTCTTTCAGTAGATAAATTTCAGCTTGAGAGGCGGTGGGAACTCTAGATTCTCCTCGACATTTCTAGTGACTTTCGAAAAGACAATAGGGCTCATTTTTTTAGTGGAGGTTAGTGAACGGGGAACTTCAGTCCTTTTTTCTTAGAGTGCTGGAATCTTTTCAGTCAACCTTGAAGCAGGTTTCTGCCACCTTACTTTGTGTTTTAATCCCCTCCTGCCCAAAAGGGATGTTCTAAAGTAATGTAGATTTGTTCTAGTTGATGGGGGGAGGGGTGAGAGCCACTTAAAGTAAATCTTGGGAAGAGGCAAATTATTTAGGATATTCAGCTTTGTAATGAAAAAAACAGTACAGAGGTATTATAGCTTTTCTTCTTTTTAAATGGTGTAGTATTGAGTATTGATCTTAAAAAAATTTAATTTTCAATTAAGTTTAATTTTAAAAAGGTTACCACAATTTTAACATTTAAGCACGTTATATACAGAAAATCAGCAAGCCCAAGTACTCTGTTTCGGCATTAGTCATTGTTATATTTTTATTTTTTTTATTTCTTCCATGGACTACTGTACAGTTGTAGGTAATTGTTTTTTGATGACATGACATCTGTGCCCTAGTTAGATCCCTGTATTTCTTCATAGACAGTTGAGAAATATAGTCTCTAAATAAGAATTGTTTCAAGGTATATTTAGTCCATCATCTAGTCTGGAACTTATTAAATTTAATGTTCTTTCTGGGACATAGCCATATTTTCACAGTTTTGAATCAGTGCATTTACACTTGGGCTCATGAGGTGCCATGAAAGGTAACATATGTTTGGAATTTCTCGCTGTGGCCCCAAGGTTGGGATGAAACCCTATAGCATGATACACAGGAAATTCAGCTCCCCAGATGTACTGGTTTACTCTTCCTTTCAGGATTGTTCTTGATCTAAGAATAGCATTTCAAAAGGAAATTTGTTTATTTTTAACAGACATTTTTAAAAAATAATGAAGTCACTTACTCACCAGAAACAAAGACCAGAAACCAGTTTACAAAGCCAGTGCTGAAGAATTTAGGGAGTTGATTCTGATGTAAGAAGACAATGGATAAAGTATTTTTCAGAAGTCAGTACAAATTGGCAGCAAATCTACCAAAAACAAATAATAAGAGAAAAACTATCAGTGATGGATTTATCTTCACATGTAGCATGTACTGGTTTAAATCAGTGAATAACTACATAGTTATTGAATTCAAAAACTTTTATTTAGACCTGGTCATCTATTCTCTTAATTAAATGAAATGAAGTTTATGGAGATTCACTTATAAGTCATGTGTTGCTTAATGACAGGGAAACATTCTGAGAAATGCATTGTTAGGTGATTTCCTCATTGTGCAAACATCACAGAGTATACGTACACAAATCTAGATGGTAGCACCTATTACACACCTAGGCTATATGCTATAGCTTATTGCTCCTAGGCTATAAACCTCTACAGCATGTTTCTGTACTGAATTCTGTAGGCAACTGTAGCAGAATGGAAAGTATTTATGTATCTAAACATAGAAAAATATATAGTAAAAATACAGCATTGTAATCATATATGTGGGCCATTAGGTGATGCATAACTGTAATATCTAATATTTAATTTATTAGATAGTTATCTCAAACATTTAGTATCTAGTAAATAAACTTATTTTATATTACTATCTAG
Seq C2 exon
GGGACTTATTTGAAAATTACTGCAGAAATGATGACCTGGTAACATTTGGAAGATTTTGTTATGGTGTCACTGTCATTTTGACATACCCTATGGAATGCTTTGTGACAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169507-SLC38A11:NM_173512:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(15.8=100)
A:
NA
C2:
PF0149013=Aa_trans=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)