HsaINT0153328 @ hg38
Intron Retention
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161956989-161958555:+
Coord C1 exon
chr2:161956989-161957240
Coord A exon
chr2:161957241-161958486
Coord C2 exon
chr2:161958487-161958555
Length
1246 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CTCCAATTGTTCTTTTACAGTTT
3' ss Score
8.24
Exon sequences
Seq C1 exon
AAAGGTTGTGGGTACCATCTGGACCTATTAATGGTGGCTGTCATGCTCGGTGTATGCTCCATCATGGGCCTGCCATGGTTTGTGGCTGCCACAGTCCTCTCCATCACTCATGTCAATAGCCTAAAACTGGAATCAGAATGCTCAGCTCCAGGAGAACAACCCAAATTTCTCGGCATTCGGGAGCAAAGGGTTACTGGGCTTATGATTTTTATTCTTATGGGTTCATCAGTCTTTATGACCAGTATTCTGAAG
Seq A exon
GTAACAAAATCTGTCTTTATGAACTTGAGAGAAAGAATACATTTATCATCATTTAAAATTTTCATTTGAATCTGAGCCATAAATTTGCAAATATTGTGTGGCATGTGATGAAAGTGATGAATTTCTGAACCATGTTTATATAATTCTTCATAACCTAAGGGAGGGAAATTACGTCCTATATTTTAAAACCCTTAAATACATAAAAATTTAGTCTGGCAAAGTAAAATTTGATGAGTAAATTATTGTAACAATTTTGAATCGGTGATCAAGCTATGGGAAAAAGTCACTCATTGTTTCTGACTGACTTGTGACCCGAATCCATTACAGGCATTCATAAAGATTCTATTTTCTTGTCAGTGGATAAATATATTAGCAGTTAATATTACTTACTATTAATAAGAGATAGAGGTGAAGGGATGAGCCTGGTTATAGTCACATACGCAGTTTTCCATTTTAAGTGCTCTGTAAAACCACTGTCTGGACATCATCATTGCATATAGTGATTTTTTTTTCACACAAAACTTGAAATCTATTTTTAAGAGGATTAACTAGTAATTATTTTGTCATGTAATTTTGTCAGATATTTCCAAGGTGTGTCAATTGCGCTATAAATTACAACACATTTTATTTGCCTATAATTTGACATTTTAATTAAATTATTTAATGATTTACACTAGTTTACTTGTATTTGATCATTAACACAAGTACCTTTGCAAGAATTAATCTCTGTTATATAAGTAATTATGTTATAGACATAAGATGATGTGAACTATTCCAATAAAAAGAGAAAATCTGAATTATCCATATATTTACAAATACCTGGTATAATACAGGAAACACATCTAAATGTTAGCTTCATTTTTAATCCACCTTTAATCCAAATATCTTATCTTTGTAAAGCAAAATTCAAGTTGTCTCCAAAGTAGCATAATAATAATATTATTGTTCATTATATACTACATGGTTTTTAAAAATAGATTTTGACCTATTAAATAATTATAACAACCCTATTGTTATCATCTCCTTTTAGATATTGGGAAACTAAGGCACAGAGAGCTTAAGTAACTTACCTAAGGTTACACAGCTAAAAATGCTAGAGCTGGAACTTGAATCCTTGTCTTCTGAATCTGTACTATACTGTTTCTATTCAAAAATGCCTTTTTTCCCTGTTTTTTTCTTTGATAAATGCAAAACCACAATCTATTTGAAAATGATTTCTGCCTTTTCTCCAATTGTTCTTTTACAG
Seq C2 exon
TTTATTCCCATGCCAGTGCTATATGGAGTGTTTCTTTATATGGGTGCTTCATCTCTAAAGGGAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290:ENST00000415876:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCATCTGGACCTATTAATGGTG
R:
TGAATTCCCTTTAGAGATGAAGCACC
Band lengths:
310-1556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains