HsaINT0153525 @ hg38
Intron Retention
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4 member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr5:140366151-140367581:+
Coord C1 exon
chr5:140366151-140366264
Coord A exon
chr5:140366265-140367419
Coord C2 exon
chr5:140367420-140367581
Length
1155 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CATGAAATGCCCTCCTCCAGCCC
3' ss Score
5.09
Exon sequences
Seq C1 exon
GTGCGCAAAGGGCTCAGCGACTTCTCCTCAGTCCTGGCCATCCTGCTCGGCTGTGGCCTTGATGCTTTCCTGGGCCTAGCCACACCAAAGCTCATGGTACCCAGAGAGTTCAAG
Seq A exon
GTGAGAGCCAGGGAAGAGGGTTGGGGGACCAGAGGGGAAAGCAGGGCCAGCAGACCATGGGGAAGGAAAATGAATAAATCCCACACTTCTCTAAGCTTCTTTCTTCACTAATAAGCTAGAGATAGTAATAATAATGGCCTCACAGGGTTGTCATGAGGATTAAATGAAGTACTGCAGCAGACACGTGAGTACAGAGAATACACGGTAGCTATTATTACAGGGTATGGGTTAAGAGAATGGGTTCTGATCAGCCAGCCCTGGGTTTGAGTTCCAGTTCTTCCACTTCCCAGCTATGCATTAGGCAAGTTAATGCACATTTCTAAGCCTCAATTTCTTCGTCTATAAAATGGAAATAATAAAATGACAATAGTTCCTACCCCGTAGATTGTTTTGAGGTTTACAGAAGATCACAGTGGAAAGCACTTACCACATGCCTGGCACATACCAAGTCCTCAATAAATGTTAGCTATTATTGTTACGGGATTGCCCCACCCTTGGCGTGGCCCTGCCCACTCCACTACTCCTCACTCTCTTCTTCCCACCCCACGTTGCCTACCCTGATCCAGGAAAGCTGGAACTCCCTTTCCAGGGCATGACAGTGTGCAGGACAAGGCTTAGCACTGATTTCTAGACTTTGCCTTTGCATTTGGAGACCTCCTCTCCAAATTCCCCCAAGACAGGAGAGCAGGGAGGAATCCAGCTGGGGCAGCAACTGGGGCCCCCTCCCCAACACATATGCTTGTAATCAGCGTGGACACAGACACACCCAGCCCTGTCCCTGCCTCAGATCAAGGCAGGTCTGAGCCTGAGTTGCCCCACCCGGGATAGGGGGAGAGGGATCTCTAGGGAGCAGGGCTCTGTACATCAAGAAGTGTGTGTAGGCCACATGTGCCACCTCCTTCTGTTCCAGGGAGGGAGGGACCCTGAACCAAAGTCCAGAGCCCCTGGTTCCAGCCTGACCTCAGGGCTGGTCTCCTTCCATCTGCTGTCTTTTAAGGCACTGGGATGCTTTGAACCAGCTATGCACACACAGCCCACTAGCATCTAGTGACTTGGGGTGGGGGCAGGTTGTGGAAGAATGCCAAGGTTGAGATGTGCAGGTGAGATGCTCTTGGGAGACCCACTCCAACCTGTCCATGAAATGCCCTCCTCCAG
Seq C2 exon
CCCACACTCCCTGGGCGTGGCTGGCTGGTGTCACCTTTTGGAGCCAACCCCTGGTGGTGGAGTGTGGCAGCTGCCCTGCCTGCCCTGCTGCTGTCTATCCTCATCTTCATGGACCAACAGATCACAGCAGTCATCCTCAACCGCATGGAATACAGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073:ENST00000506757:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(15.1=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGGCTCAGCGACTTCTC
R:
TGCAGTCTGTATTCCATGCGG
Band lengths:
270-1425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains