HsaINT0154577 @ hg19
Intron Retention
Gene
ENSG00000121871 | SLITRK3
Description
SLIT and NTRK-like family, member 3 [Source:HGNC Symbol;Acc:23501]
Coordinates
chr3:164904508-164914469:-
Coord C1 exon
chr3:164914380-164914469
Coord A exon
chr3:164908640-164914379
Coord C2 exon
chr3:164904508-164908639
Length
5740 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CATTTTTATTTCTGTTGCAGTTT
3' ss Score
9.08
Exon sequences
Seq C1 exon
CTGATGGATTTGCATTCAGGTTCCAGCCCTGCGTTTCCTATATTGACTCCTTATACACGACCTGGCGCTCCAGTTTAGGAGGAGACGTTG
Seq A exon
GTAAGTAACGTGTAATCCGATTTTAGTTATTTCCTAGGCCATTAAAGTGGCACTTTTAAAGCAGGTCAGTCTTAAAAGATGCCGCCGCCGCCGCCGCCGCGAGCGTCTCCTTGGCCTGAAACGTTCAGCAGTCCCCTCCCCCTCCCACCCCCCTCCCCCGCACCTTCTCCCGCTCGAGAAGTGAGGGTGCTTGAATGGTGAGCGGTCAGAGGACTCACTCTCTGCCAACGGTATCGCTTCACCTTCGTGCTTTGCCTGAGATCTCCCAAATCCAAGTGGAATTTGGTGTGCACAGCCATACTGTGTATTTGTATCTTCTCTCCCCCTCTCCTTCTTTCCCCCCACCTTCGCCGTCTGACCAATGCTGGGATCTGAGATCTAGTCGCCCCCTTCCTGCCTCCTTTCCGCCTCTCCCCACCCTTTTCTTCTCTCATCTACACGCCACCAACCCCCACTCCCACCCACCTAAAGGGCAAAGAGCAAAGACACCCTGGAAAAGCAAGGGCTAATTCCATCTTCTCGGATGGAAGGAGGCCTCGGGCAGGGATTGCGCTGTGAGTGACAACCTTTGAGGAAGAGAGAAAGAGAGAAATCCAGAGACTGAGCTCAGGCTCTCGGGAACAACGAAGCTCTCCACTGATCCAGAGCACCGAGATTTTAAATCAAAGGAACCTAGTCCTGGGACACTCACTCTGCCTGCCTGCCTACCAACCATCGAGGGCATAGGGAGCTGTGGTCGTGAGCTCCCTGTCGCTGGCATCGCCGCGCTAGGTGCGCGCCCCGCTCTCCCATTGGTATGCAGCGACCATTTCCCTGCAAGTCTCAAAGGTGGAAACATTTAAACGGATTACAAGCGTGATTCGGTAGCCTTTCGGAAAGTTGGTGGCCAGAAGAGGAGAAGCTACAAGGCTACAGTATGATGGATACAATTCAGCTTCGCAGAGAGTTTGCCCCTCCTGCTGGGTAGCCCCTCGCAGCAAACCTCGGAGATCCTGAGCGCTCTGCACCATAGGTACTCGCCGCCATCCTTTCCTACTTCGCCTAATTGAAACCAGTATTTCTCGTATGTAGGATGTGCATTGTAGAGCACATCGAGTTTGGCCGCGGTGTATTCTGTACGCTCACAGGTGCTAGGGGTTTGTTGCAGTTTTGAATTGGATCAGTTAGGTGTAAGGACGTTGGTGGAAGGAGGGGTACCGGAGACTAACATACCCTCGGACCTCTTTTCTGGGTGAAGACATCGTAAGTAACTCCAACAAATAGGCCAGGTGGCGGAGCGAAGGACCCCTCCCCCAGTGGAATGCTCGCTGGTGTTGTAAGAGGTAGAAGGAAAAAGGCTTGAGCTTTTAATAATTTTCCGTTTCTAAACAGACCATTGTGCGTTTCGCCTGACGACAGCAGATTAGAAAAGGCTCTATAGACGGCTCAAAGCTCTTCAGAAAATGAATGATGCAGCGTTTTAATTATTTGTTCTAGGGAAGATAGTTTTGCTTCCATATTGGAATACTTAATCTTAGATCTGAAAAAATTAGTGAGCTGTAAGATCCAGCAGTGGGGAGGAGGAAGTGGGAAGGGGGCACAGCAGGGAGAAAGGGCTTCTTGTCCTCCCTCTGGACAAACAAATGGCTCTGGGCGCTCCCAGCAGGACACGGAAAAAACTGGGGCCCCATGGCTCAATATTCCCTAACTTTTGGAGCCCTCCCTGTCCTTTAGACGCGCTATCCTGAGCTAAAGAAAAGGAAAAAGGTGAGATAGCCTTTAGGACACAGCCCAGGTCCAGAACGTAAGGGGTTTTAGTTCAAGAAATAACAGAGACTTCATTGCCGAGACAACATTTACCGTCATCTGGAAGCTCAGGGCAGCCTCCGGGTTACCCATCGATTCCATCACATCATGGGTTCCGATAACACCCGATAAATAGTCACCGCCTCTGCACATTGGGTACCCAAAGTGCTGGGCGGGGGATGGGGGGGAGGGTGCGGGTGCCGGCAGCTGGGGAGGGAGAGGGAATTGCTCTGATTCTGAGCTTAGGCTATCGGTATTGGTTTACTTCTTGGCTAAGACCTATGGGAGCAATAGGGTGAGTCTGGAATATTAAGGGTAGAATGTTAGAAAATTCTGCCCTCCTGCTTACTTAGTGTATGGTGGCATGTTTCTAAAATTAGCTACTGTCTGCCAGTGGACTCCTGTGCGGTCATTTTAAATGCAAAATATCATGGAAATTGCCTTTGACTGACTTTTAAGGAACACATTGTTAGGTGATTTACCTGTTTTAGAGCAGTAAGAAATTGACATGTAAGCTGTGCTTTGCTTTAAAATTTGCTTTTGTAAAGGGTCCATTAAGGGAAAACCATCTCTACCTACTAACTTTGAGTCCTTGGGCAATTGAGGTTCAGTTTAGTTCTTTAGCAACCAAAAAGTCCCTGCCTTCTCCCCTCCCGGCGAGGAGTTGGTGACAGGATTGGTGTGTGCTGGTGGGGGCAGATGGGGAGCATCCACAGCACACGGGTCCTGTTGATTAGACTCCTTTGCTGCACACTTGGCTCTCCCCAGTTTCCCCACCAAGCTGCATTCCTTCCCAGCAGGCAGGACTGTAGTGCTGTCAGCTGAGCCTTAAAAAAATTCCTCTGAAAGCGTTCCTGAACTGTCATCTGGTAGTCCCTCTACAATACAATATCTTCCTTCAATCACCTCCACCCCCACTCCCACTACTCCCTAGGATTCACTCCCCGAAAATTTCACGGAGAAATATTTGAGTTTAAAAAATAAGAAAGAGAAAGAACGGACAAAAGCATCCAAATCCTTAAATCCACCCCAATCCCGCGAGGTCTTTCCCGGTGGCGCAATGTGAAATGTACCATTGTTACCCAAGTGGTCTGTATCTCCTTCCAGAGAATTGGCTTGTCTCTGTTTTTAAAAAGTGGAAGAAAAGAAATGCTGTTGAATCCAGGGGCTATCGAAGGCTTTGACCTGCAGCACAACAAAAGAATTCCTGGTGCAACGGGATCGAAGCAAAATGCAGGAGAAACTCGGTCCAAGTCTTTCAGGCTGTCTGAGCTCTTATTCGGGACACCCAGGCAGAATCAGACAGATTCAGCTTTTCTGCTTTGGGGACCTGGATTTCCCCCCATCCCCGTCATTGCAGGGAATGGCTGTCCTGTGAAAATGATACTTACGAAGGATAGTCTCACTTTTCAAACCACCTGCACTAGAGAGATGAGCTTTGGAAACTAAAGGAGCAAATCATTCAGGGGATGGTTTCCTTGAGAGTTTAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAATGCCTATCCCTGCCCCCCTCCCCCATCTCCACCTTCCTCACCAAAGAAATGTTTCCCATAGGTTGGTCTCCTCCCCCTTCTCTCTGGTTTCTTATTTTGCCAATTTGTGTTCTCTACCCCTCTACTTCTTTTCCCTACACACACACACACACACACACACACACACACACTCACTCAACTGTATAGTCAGGGGTTCCTAGTGCTCGCTCCCGAACCCATGCTAAGCGCGTTCCCTTTGGAGCTCATTTTCATGACGTGGAATGCTGGGTTCAGGGTTATAGCACATATATATTTTTAAAGCCGGAGCGAGAGAAGTCTGAGATTCTGCACTGTGATTGAGCCTTCCTTCCTCCCTGCCTCCCTCCTGTGCTTCCTCCCAGTGCCCAGTGATGTGCTGTGGGTACCCAAAGAGAGCAGCCACCGCGGCGGCAGCGGCAGGGGCAGCAGAGCTGGAAGCCTGCTGCAGCCCCTTCTCCTCCCTCCTCTACTGAGTGTGCCAAGCGGCAGTTCTGCATCCTAAAGAAGCCCATTGAAGAGCCCATTGCATTCCCAGCACGTCTCAAGCTTGCTGCTTTTTTTTTTTTTCTCTTAGTCCCCCCGCCCAACCCCCTTTATCCCCTTTTGCTTCAGCTTCAGCAAAGCAAAGGGAGGGGGAGGGAAAGAGAGAGAATCCTTAAACTCAAGCTTTTTTTTTTTCTTTTTCTTTTCACGGTTCCATGCTAATAAATAAATAAATAAATTACAAAAAAACCCGAAACCCAAAAAAACTCTGGCAAAATAGGTAAGTCCAACACATCTGTAGCCTTTTTTGCCTAAACCATAGGGACCTGAAAAACAAGAAAAATATTTAAGATGGTGAAGAAAGAACTTAAGTAGATTTTAATATTTCATAAGGGAGATGGAAGACTAATTGATACTGCAATGTAGCCTTTTCTCTCTCCCTCTTTTTCACTGAATTGTTTTTAATTTTTGAGTATTGCATGTCTGAGGCAGATTTCTCTTTGCTTTCTCACGGTATCTCCTTTCTTTACAGCTGTGAACATTATAGGCGAGTGTAATGTGAAGATTTATTTCTTTCACTTTTCCTATAAATTATATCATTGTGGTTTAAGAAGAAGGTTGATGAAATATATCTTTCTGTGTGCTCTCTATGAGGAAAATATATGCTAGAAACTTTGGTTTATTTTTGTTGATTAAAATCAGCTATTAAATTTTGATTGATATTTTAGTGACTCAGGAAGGACAGTGTAATAAAACTGCATTATTATCATTTATGTAAACATTTTCATATACTGATGTTATTAGGCAAGGAAAACGATGCATAGAGAAAGACTGTTATCAGAATAGTGCACTGCATTTGTTTCTTCTGATTGGAAAAGAATGATATCTTTTTTGAAATTTATTTCGTGTGATAGATCATTTATCAGCAGGTAAGAATAGAGGTTTCCACTCTCTCTTGACTTTAACTACCCACCTCCCCTCTAACCAGCCACCTGCTCTTCCAGCTTTTTACAGGGTTCCTCAGTTGATCTTGAAGGCGCAGATACACATTCCAAACTAAGTTTTGCAAATGTTTTAATTCAGACACTTTCAGACTCAGCATCCTCTAGCTGTCCCTATCTTTAGCTCTGACAATTGCACGGGCATGTTTTTTAGAAGGGCTAATCACTCCTACATGTTTTAAATAGTCAAATGATACAAATATATACAAATTATTTATTAAATTAAAGAAGATGACAATAATGTATTATTGGGCAAGAAGATGTGGACATATAGTGTACATACTGACTATACACTGTAATAAAGCATGTTATGATCATTTCATAAAAATAAATCTTAAGTTTTCCTGAGATGCTGATCATTTTACACATCTCAACATCTGATATTGAGCAATAGGCTCATACTTTATCACACTAATCAATATAATAATTTTGGAGTATATCATGTCTTTTTAATCATCAAAACCTATAACTCAAAGAACATATTTTTCCCATCAGAGTTCCAATCAGATTTATTATGAGTATCTTTGATGTCAACATGAGTTTTAACAGGCAAACAGGTGTGATGGCCACATTATTGCCATTATTACTGAATCTGCCTATGCCTAAAAGGAAGTACGATATACCAGTTCTGTTGTTTGTTATACAGAGGCAATGCAGGCTGCTTTTGTTCATGCAATATGCCGTTTACCAAGTATGGCTTGGTTCAGGAAAATGTCACTGCATGGTTCAATATTTCAGAGTCTCCTAAGTTTAAAATATAGGACACACTCTAAACATTAAGTATGTTGCTAGCTCATCTTGAGTGTCACTTCAACAATTGCTGAAGTTTTTATATAGCTCTTAAAATGCCCCACATGTAGGAGTCAATTAAAATAGTACATATGACTAAAAGCTAAAAATCTGCATTTTTATTTCTGTTGCAG
Seq C2 exon
TTTTGTAATCAACCACGAACGATGAAACCTTCCATAGCTGAGATGCTTCACAGAGGAAGGATGTTGTGGATAATTCTTCTAAGCACAATTGCTCTAGGATGGACTACCCCGATTCCCCTAATAGAGGACTCAGAGGAAATAGATGAGCCCTGTTTTGATCCATGCTACTGTGAAGTTAAAGAAAGCCTCTTTCATATACATTGTGACAGTAAAGGATTTACAAATATTAGTCAGATTACCGAGTTCTGGTCAAGACCTTTTAAACTGTATCTGCAGAGGAATTCTATGAGGAAATTATATACCAACAGTTTTCTTCATTTGAATAATGCTGTGTCTATTAATCTTGGGAACAATGCATTGCAGGACATTCAGACTGGAGCTTTCAATGGTCTTAAGATTTTAAAGAGACTATATCTACATGAAAACAAACTAGATGTCTTCAGAAATGACACCTTCCTTGGCTTGGAAAGTCTAGAATATCTGCAGGCAGATTACAATGTCATTAAACGTATTGAGAGTGGGGCATTTCGGAACCTAAGTAAATTGAGGGTTCTGATTTTAAATGATAATCTCATCCCCATGCTTCCAACCAATTTATTTAAGGCTGTCTCTTTAACCCATTTGGACCTACGTGGAAATAGGTTAAAGGTTCTTTTTTACCGAGGAATGCTAGATCACATTGGCAGAAGCCTGATGGAGCTCCAGCTGGAAGAAAACCCTTGGAACTGTACATGTGAAATTGTACAACTGAAGAGTTGGCTGGAACGCATTCCTTATACTGCCCTGGTGGGAGACATTACCTGTGAGACCCCTTTCCACTTCCATGGAAAGGACCTACGAGAAATCAGGAAGACAGAACTCTGTCCCTTGTTGTCTGACTCTGAGGTAGAGGCTAGTTTGGGAATTCCACATTCGTCATCAAGTAAGGAGAATGCATGGCCAACTAAGCCTTCCTCAATGCTATCCTCTGTTCATTTTACTGCTTCTTCTGTCGAATACAAGTCCTCAAATAAACAGCCTAAGCCCACCAAACAGCCTCGAACACCAAGGCCACCCTCCACCTCCCAAGCTTTATATCCTGGTCCAAACCAGCCTCCCATTGCTCCTTATCAGACCAGACCACCAATCCCCATTATATGCCCCACTGGGTGTACCTGTAATTTGCACATCAATGACCTTGGCTTGACTGTCAACTGCAAAGAGCGAGGATTTAATAACATTTCTGAACTTCTTCCAAGGCCCTTGAATGCCAAGAAACTGTATCTGAGTAGCAATCTGATTCAGAAAATATACCGTTCTGATTTTTGGAATTTTTCTTCCTTGGATCTCTTGCATCTGGGGAACAATCGTATTTCCTATGTCCAAGATGGGGCCTTTATCAACTTGCCCAACTTAAAGAGCCTCTTCCTTAATGGCAACGATATAGAGAAGCTGACACCAGGCATGTTCCGAGGCCTACAGAGTTTGCACTACTTGTACTTTGAGTTCAATGTCATCCGGGAAATCCAGCCTGCAGCCTTCAGCCTCATGCCCAACTTGAAGCTGCTATTCCTCAATAATAACTTACTGAGGACTCTGCCAACAGACGCCTTTGCTGGCACATCCCTGGCCCGGCTCAACCTGAGGAAGAACTACTTCCTCTATCTTCCCGTGGCTGGTGTCCTGGAACACTTGAATGCCATTGTCCAGATAGACCTCAATGAGAATCCTTGGGACTGCACCTGTGACCTGGTCCCCTTTAAACAGTGGATCGAAACCATCAGCTCAGTCAGTGTGGTTGGTGATGTGCTTTGCAGGAGCCCTGAGAACCTCACGCACCGTGATGTGCGCACTATTGAGCTGGAAGTTCTTTGCCCAGAGATGCTGCACGTTGCACCAGCTGGAGAATCCCCAGCCCAGCCTGGAGATTCTCACCTTATTGGGGCACCAACCAGTGCATCACCTTATGAGTTTTCTCCTCCTGGGGGCCCTGTGCCACTTTCTGTGTTAATTCTCAGCCTGCTGGTTCTGTTTTTCTCAGCAGTCTTTGTTGCTGCAGGCCTCTTTGCCTACGTGCTCCGAAGGCGTCGAAAGAAGCTGCCCTTCAGAAGCAAGCGGCAGGAAGGTGTGGACCTTACTGGCATCCAAATGCAATGCCACAGGCTGTTTGAGGATGGTGGAGGTGGTGGTGGCGGAAGTGGGGGTGGTGGTCGACCAACTCTTTCCTCTCCAGAGAAGGCCCCTCCCGTGGGTCATGTGTATGAGTACATCCCCCACCCGGTTACCCAAATGTGCAACAACCCCATCTACAAGCCTCGTGAGGAGGAGGAGGTGGCTGTTTCATCAGCCCAAGAAGCAGGGAGTGCAGAACGTGGGGGTCCAGGGACACAACCACCGGGAATGGGTGAGGCTCTCCTAGGAAGTGAGCAGTTTGCTGAGACACCCAAGGAGAACCATAGTAACTACCGGACCTTGCTGGAAAAAGAGAAGGAGTGGGCCCTAGCAGTGTCCAGCTCCCAGCTTAACACCATAGTGACGGTGAATCACCATCACCCTCACCACCCAGCAGTTGGTGGGGTTTCAGGAGTAGTTGGGGGAACTGGGGGAGACTTGGCAGGGTTCCGCCACCATGAGAAAAATGGTGGGGTGGTGCTGTTTCCTCCTGGGGGAGGCTGTGGTAGTGGCAGTATGCTACTAGATCGAGAGAGGCCACAGCCTGCCCCCTGCACAGTGGGATTTGTGGACTGTCTCTATGGAACAGTGCCCAAATTAAAGGAACTGCACGTGCACCCTCCTGGCATGCAATACCCAGACTTACAGCAGGATGCCAGGCTCAAAGAAACCCTTCTCTTCTCGGCTGGAAAGGGCTTCACAGACCACCAAACCCAAAAAAGTGATTACCTCGAGTTAAGGGCCAAACTTCAAACCAAGCCGGATTACCTCGAAGTCCTGGAGAAGACAACATACAGGTTCTAACAGAGAGAAGAAAATATATTAGTGCTTTTTTTTTTTCAAAAGAAAAGGAAAATAAAAGAAATATATCCCTTGCTCCCTTTACACTTGTCCCAGTAACTCCATCCTCACGATCTTTCCTACCCTGAACAAAACTAAAACCGCATGATAACTAGAGAATACAGATGTATGCTCTCCCCTCTCAGATGCGATTTGGAGGAAGGGCCATACTCAGATCATTAATCAATGAAAGTGCCTTCGCAGACTTTTGCCAGCAAATGTTATCATTATTTTTTTATACTGAAACTTGAGACTTTGACTGTGCCATGTATAAGATATACTGGGGATCATTGTATGGATCCTAATTAAGTAAAATTCAATGTGTCTTTTTATTTTCAGTAACTATTTTTTTTATAGTTGTAGTTTTGATTTAAAGGGGGGGAAACAAGTTGACATTTGTCATTTGTGGCTTTCTTTCTTATCATCATGGCACAGATTCTGTACATGTATTAACAATGCAGTTTGCTGCATGCCTGGAAACTGCAAGATGGGGAGGGAGGGGGCGGGTCTTGCTCGAATGTTCTCACTCACTATCTTGTCTCTCATACACATATCCATCTGCAGACCATGGTCCCTAAACCTGCAGTTTCTTCCTGCTGGTGCAGGTACACACACACACACACACACACACACACACACACACACACACTCCATACCATTTCCATTCAACTCAATCTGCTTAGTTCGGGTTTGATCCATTTTTCTCCTCTCCATAGTTCTACCACCCTTCACTGCTAGTGTACAGCTCACAGCATCTCTCCTACCACCCTGGGAAAAGTCACATTCTAGGCTGGATTCTACTGAAGTAGAGGCCTGGTGGTTTAACAGCCGAAGACACACGCCTAGGGATGAGCACCCTCTTTGTGACACTTCATCCTGATGCCAAGATTTTTTGGAGAACATCTGCACTTTCTTATATATATATATAATATTAAAAAAAGCAACTGGGTATATATCACTAACAGCTTTGTAGGAAGCACTTTTAATGTTTTCTCTCTCACACACAAAGATTCAAAAGAAATGTGCATATATTTATTCTGTAATTTCAGTGATTATAAATTGTAAAGGTAATGTTTAATCATTGTATAGTGATTATGCCTCTGGTATAGCTTTCCTAATAAAAAGTTTTTGAAAAACATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121871-SLITRK3:NM_014926:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138551=LRR_8=WD(100=5.9),PF0146213=LRRNT=WD(100=2.8),PF138551=LRR_8=WD(100=6.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)