HsaINT0155952 @ hg19
Intron Retention
Gene
ENSG00000233016 | SNHG7
Description
small nucleolar RNA host gene 7 (non-protein coding) [Source:HGNC Symbol;Acc:28254]
Coordinates
chr9:139620763-139621538:-
Coord C1 exon
chr9:139621498-139621538
Coord A exon
chr9:139620869-139621497
Coord C2 exon
chr9:139620763-139620868
Length
629 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GTTCTTGATTCTTTGCCAAGCAT
3' ss Score
0.77
Exon sequences
Seq C1 exon
GACGTCTGCTCACTGGAGATGACACGTGCGTGGGGTGTTGG
Seq A exon
GTAAGTTGGTGCATTGGAGCTGGAACAGGGTCAATCCTCCAATGTAACTAAGCCCTCCTGTGCAACATCTTAAGTGACTGGAGGGACCAGTCGGTCTTGTGTTCACATTGAGGCTAGAAGCTGTCTCCAGGGGAGTAAAAACGGATTATTTAGTCTTCAACAGGACACTGCCCCTAGAGGCGTTGCAGCTGTGGCTGCCGTGTCACATCTGTGTCATTAGGTGGCAGAGATTAGAGAGGCTATGTCTACGCTCAGCGTTCTGCCCCGTGAACGTTTGAATGTTTGATAGTCTCACACTCCTGTTTTGTGGACAGGCATCTGTTTTCCTTCGCTGGTATCTGGGAGAGAGGGTGGGCCCTGTGAGTGGGCTTTCTAACTCTCGCGCTGGGCTAGGCTGGCCTCTAGGGGTCTGAAGGGATAGTGGGAAGGTGGAGGGTGCCTTCACCAGGAGCAGCCTTCATGAGTGAGTTTTAAGAACCTGTGAGGATCGGTCAGGTCAGGTGAGGTACGCGCTGGATCATGCCGTACACCGTGTCAGGATCACGCAGGACAGGACTGGGGAAGGGTTTGCTGGCGTCTCGGTTAATAGCAGTAACGGCAGCCGCTTGTGTTCTTGATTCTTTGCCAAG
Seq C2 exon
CATTCTTGTTATTTAACACGGGAAGGAGGTGACTTCGCCTGTGATGGACTTCCAGTGTGAGCACTGGCCAGAGTGACCAGGCTGACCAGCACCAGCCCTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000233016-SNHG7:NR_024542:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)