HsaINT0158814 @ hg38
Intron Retention
Gene
ENSG00000146700 | SSC4D
Description
scavenger receptor cysteine rich family member with 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr7:76395253-76397832:-
Coord C1 exon
chr7:76397518-76397832
Coord A exon
chr7:76395331-76397517
Coord C2 exon
chr7:76395253-76395330
Length
2187 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CCCCTTCTCTCCTGCCCTAGGCC
3' ss Score
11.79
Exon sequences
Seq C1 exon
GTGAGGGCAGCGTACGCCTGGTAGGGGGCGCGAACCTGTGTCAGGGCCGAGTGGAGATCCTGCACAGTGGCCTGTGGGGCACCGTGTGTGACGACGACTGGGGGCTGCCGGATGCCGCTGTGGTCTGTCGTCAGCTGGGCTGCGGGGCGGCCATGGCCGCCACCACCAACGCCTTCTTCGGCTATGGCACCGGACACATCCTGCTGGACAACGTGCACTGCGAAGGCGGCGAGCCCCGCCTGGCAGCCTGCCAGAGCCTGGGCTGGGGTGTGCACAACTGCGGCCACCACGAGGACGCGGGCGCGCTCTGCGCAG
Seq A exon
GTGCGGGCTCTAGGGGCGATGGGCGGGGCCGGGGCAGGTGGGCGGGGCCCTGTGGCAATGCTGGAGGAGGAGGCTTCGGTGGGGAGGTGGATGGGGAGGGTGTTTTGGCTGTCTTGATGCTCCCCAGAGCTCTCCAGGCAGCATCCAAAATTACTTCTATCTCAGTCCTGTTCTAGAAGTGCCTCCGAATATCCCAGAACTCCTTGTGGTACACTCCATGGCTATGAAACAATATTGCACTAATCCAGTCTGGCCAACATGGCAAAAATTAGCCGGGCGTGGTGGTGCATGCTTGTAATCCCAGAGACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGCTGACGCCACTGCACTCCAGCCAGGGTGACAGAGACAGACTCCATCTCAAAACAAACAAACAAAAAAACTGTACTATTGCTTCACCAATACTCGAGAATTCTATAGCAATATCCCAAGAATGCCTCCAGAATGTTCCAGCAAGTACTGTTCCTGGACCACTTTAGAGTAACACTCTAGGATAACACTCGGAGTAACACTCTAGAATTGCCCCAGAGATATTCCAGCATTCTCTGATGCTCACAGCATTACCTAGCACACCCCTCTGTCATCCTGATGCTCTAATAATAGTATTTTCTCCCCACCTAGGCCCTCTCCAATTTGGGAGGGTTTCTCAGCAAAGAGGAATAATAGGGCCAATAATGCTATTTCACAGATGGACTCTGCTCTGTAAGAGATAAAGTGGTTGCCCACAACTCATAACTCATAGCAAACTAAGGGCTATCATTCCCAGTGTATAGGTGGGAAAGCTGAGGCCCAGAGAGTCAGAGCCTTGCCCATGGTCACACAGTTAATGCAAGGCAGGCAAGCCCCCAAATCGAGGCTTAGTCCAGGAGGGTTTTTGGCTTCCCTCAGCAAAGAATTTAAGGGCCAGCTGGTGTTAGCAGCTTTCATTGACGCGGCAATGCACAGCAGCAGCAGAGGTCCTGCTCCTTGCTGAGCAGGGCTACCCCATAGGCAGTGTGCCCAGAGTAGCAGCTGAGAGGCAGGTCTGCAGTCGTAATTCTATTTACTTTCAAGTATATGCAAATTAGGGGGTGGATTATGCAGATATTTTAAGAACTAGAATAGTAATTTTTGGGTTGTCTGCGTTGCCATGGAAAGGTAACTCCAGGTGTTGCCACGGCAATGGTAAACTGACATGGCATACGAGTGGGCGTATCTCATGGAGAGGCACTCCCACCCCATCCCTGTTTTAGCTAGTCCTCAATTTGGCCCGGTATCTGAGCTCCACCTCCTGAGTCGAGTGAGTCCTCCCTCCTGCCCCATTCCCCACTCAAGAGATTAGTTGTTTTTTTGTTTTTTGTTTTTTCACTTTAAGAGGGGCTGTAGGAGGGCAGAAGTCTGTCTCAGTGAGCCCTGACAGAGCCCCTGCTAACCCTGGGCATGGCCCTTGCCCTGCTAGCCCTGTTTTCTCTGTAAGAGGGGGATAATGGGCTGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCGCCTGAGGTCGGGTGTTTGAGACCAGCCTAGCCAGCATGGTGAAACCCCATCTCTACTAAAAAAAATACAAAAATTAGCCAGGCGTGCTGGCAGGCGCCTGTAATCCCAGCTACTCAGGAAGCTGAGGCAGGGGAATCGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCGGAGATCGCACCATTGCACTCCAGCCTGGGTAACAAGAGCGAAACTCCATCTCAAAAAAAAGAAAAGAGGAGGATAATGAGAACTCAGGCCTGTGTATGGTCCTCCCTGATGGGCAAGGCCTTCTGTACTCCATGTCTGTTGGACACAGAGGACTTCTGATGAGAACATGGGACATTAGAGAGAAATGAAAGCGTGTCTGTTGACAGCCCTGTATAAACTGAAGTGTACACCTCACAGCACAAGTGAATTACAACCACTATCAAAGTGGGGACAGGCCTCCTTGGAACCCCGCTGCGGCTGGGCCACCAGCCCTGGAAGTAACATCTATTCTCTCCTCCAGGCAGACCCTCCTATCCTCCCCTGACAGCCCATGGCTGACCAGAGACCAGAATCTCAGCCTCTGACCCTGCCCCCTTCTCTCCTGCCCTAG
Seq C2 exon
GCCTGGGTCCCCCAACGCTCACAGCACTGCCATCCTCAGCCACAAGAGAGGACTGGGCTTGGCAGACAGATCCGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146700:ENST00000275560:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.519
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains