HsaINT0160018 @ hg19
Intron Retention
Gene
ENSG00000010327 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:18628]
Coordinates
chr3:52557887-52558229:+
Coord C1 exon
chr3:52557887-52558033
Coord A exon
chr3:52558034-52558115
Coord C2 exon
chr3:52558116-52558229
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CACCCCTCTGCTGCTCCCAGGCG
3' ss Score
7.61
Exon sequences
Seq C1 exon
CAGGCAGTGCTGGCGCCTGAAGCCCCACCTGTGGCGGCAGGCGTGGGGGCTGTGCTTGCCGCTGGAGCACTGCTTGGCTTGGTGGCCGGAGCTCTCTACCTCCGTGCCCGAGGCAAGCCCATGGGCTTTGGCTTCTCTGCCTTCCAG
Seq A exon
GTAGGGCTGGGTTGGGGCTGCCATGGCGGGTCCTTGGATCTCGCTTGAGGCGCCTCGCCACTCACCCCTCTGCTGCTCCCAG
Seq C2 exon
GCGGAAGATGATGCTGATGACGACTTCTCACCGTGGCAAGAAGGGACCAACCCCACCCTGGTCTCTGTCCCCAACCCTGTCTTTGGCAGCGACACCTTTTGTGAACCCTTCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010327-STAB1:NM_015136:67
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.338
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCACTGCTTGGCTTG
R:
AAAGACAGGGTTGGGGACAGA
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)