HsaINT0160078 @ hg38
Intron Retention
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103631598-103637236:+
Coord C1 exon
chr12:103631598-103631693
Coord A exon
chr12:103631694-103637110
Coord C2 exon
chr12:103637111-103637236
Length
5417 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
TCAACAATTTTCCTATGCAGCCA
3' ss Score
7.61
Exon sequences
Seq C1 exon
TGTGCAACTGTGTGCATGGGGTGTGCAACAGTGGACTAGATGGCGATGGAACCTGTGAGTGCTACTCTGCGTACACTGGCCCCAAGTGTGACAAGC
Seq A exon
GTAAGTACTGCTAGTTCCCTTAATGCCACACCAGATCAAACAGGCACAAATGTATGCATTTCAATTTTGTATCTGTTACTGGTTCTCTGCAGGGGCAAGGTACTACCAAAAGTTTTCTGGAAAGAAACTAGAAATTAAAAAGAGAATATAGAAGAGAAAAGGAAAGAAGAGGAGGGAAAGGGAGGAGGAGGAAGAGAGAGAACAGAAGCAATGTGGTGTCAAGGCTATAGCTGTGTTTTAGGAAGGTTGAACTGGAGGCCAGGTGAAGGGTAGAATGGAGAGAGGGACACCGGGACTGGGAAGCCAACACAACCCATCTCAACAAGTGAGTCACCTAGTAAAGGAGATACAGCATCTTCTCAATTATGAGCCTCAAAGGCGGAACACATTAACAGCCCTAAGGAAGAGGAAAGGGTGCTTCACCAACGCTGAGTGATTCACCAAAGGCCACACAACTAGGAGAGCTGGGACTCAAGTCATTTGAATCCATGGGAAATTCTGAAAACAATCTATTATACTGGGTCCAATCAAGAGCTGGAAACCAAGGGGTGATTTAAACAAGGGAAGTTTAATAGGGATAATTAGTACGCTATGATAGGAGAGCAGCTGTAAAAATGCAAACACAACTCTAGAGAGGATGGAGCATAACAAAGGAAGGAGAAATTTGGAATGGGGTGGCCGTCCCCAAGGCTGGATTTAAACCTTGTTGGAGAGGGTGTGGTGGGTGGCCGAGAAGTTTGCTGTTTTATCCAGGCCAGCACTGGACCACAGTCACCTAGCAGGCATGGGGCAACCCTCCAGGGCCTTGGGGAGCTGAGGCTGGTGGGTGAGGCACAGGAAATCAGGGGCCTCTCAGGCAAAATCCTGGAATACACAATGTCTATGTCGAGAGGGCTGTGGGAAGGTAGTCGCTAGGTCCAGGCCAAGGATGCAAGGTCAGCCACTGAGGAACTCTGGGTGCACCGCTGGGGCAGAGCATCCCTGAACAGACCCTGCAGCAGCAGCAAAGGAACACGCAGCAGCAGCAGCACACTGCACCCTGGAGGCAGAAAGAGGAGTTCCCGCCTCCCACCGTGTCCCGCCAGCGCCCTCTACTGGCAAAACTTAACATCGACCTGTGAAGGAGAAACTCACAGGATGGCAGAGCCGGGGAGCTGAGATGTTAAGAAATCGACCATTCTGCCTCTGCCACTAGCCTCATTTAACTTATCCTCGGGACTTTAGTCTCCTGTAAAATGAAAGGGTTGGGTGAGATTGAAAGTCAGCAAATGCAAACTCATTTTATTGGAAGCGGTTGAGATGCCGTGAGCGGTGGTAGTAACAGGATGAATAAACTCAGCCTCTGCCTTCTTCCTGTAGCTGGGACAGCCATGAAAGCCTCCAGTCCAAATGCAAAGGCAAGTGGGTAGGACAGGCCTTCTGTGGTCCTCAGTCAGCCTCCTTCCTTGGCCACTCCTGCCAGTGTGCAGTGGACTCCTGGGCAGAGGCCTTCTCAGTAAGGCAGGAGACCCAGTCCAGAAGCCAGCCTAAGGGAAAACCCTAATAGATATGCTTCCAAGTAAAAAAATAATAATAATTCTGTCCAGCCAAATGACAAGAGACTAGGACAAAAATATTTAAAATTCACATGGCAGATACATTTTTATAACAAAAAATTGGATTCATGTAAAGTCCAAAATCTAAATTTCAGAATAAGAAATGAAAACAGGCCGGGCCTGGTGGTTCATGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACAAAAATACAAAAATCATCCAGGCATGATGGCGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGACCCGGGAGAATCGCTCGAACCCGGGAGGTGGAGGTTGTGGTGAGCCGAGATCACACCATTGCACTCCAGCCTGGGTGACAGACTGAGACTCCGTCTCAAAAAGAAGAAATGAAAACCAGCAATAAACATGAAAAAGGTGCTAAGTCCACTAATCGTTACATACATACTTATTAAAATTCAGTCATATTTGGAGTCCTGGAGGTTTATTTTCATTTGTTTTTTTATTTTTGCCCACTATGTTACAAATTTTACCCATCTGTGGGTATGAGAAAAATGACAGTAAGAATGTGGATTCCTACAACCTACGGGAGAAATTTATTTACTAAATTTGAAGGTATGCTTATAGTATGCTTCTGTGTCCCCAATTCTAAGAATTTACCCCGGGAGAGGAGAGGAATTAGACAAAGGTAAGCATATATGATCAAATAAATTTATGGAAATGCTATTTGTAGGAGGATAACAAGCTGAAAACAACTTGAATTCCCACCAGTAGGAAATTGGTTGAATAAGTTGTGGTACATCCTATACTAGTTAGGATAATGCTAGTTGCTATAAAAAATAAACACAAAACTTCAGTGGCTTAACACTATGGTTTTAAAATTGTGCGCCAAGGTGTCCCAAGGTACTACAATCAAATTTACTGGCTACTATTGGTATTTTAAATTTCTGAGGGAAACACAGAGATACATCTGTCAGATACCACATGAACTGCTAGCTTGAGTTGGTTCACAATTTCAACATGAGGTCGCACTAATTCCTTGCAGTGACATCATATCTTTGCAAAGGTACATTTTCAGTGATTGCTATGATAAAAGGCAAGTACCGTGTGAAAATCAATGTGACTGAAATGAGGGTGCCAGTCTACAATCTGTATCAAACTTTAAAGTTTGAGAAGTTGTGCAGTGTCCAACACACTCACATATCTTATACGTAGGTCAATGTGGTTACTTAAGAATAGACATTTTTCTATTAAGCATGTCACTTTTTCAAATGGCTGCTAAGTGATTCTAACAACTAAATAAATGAATCTTTTCGGTGTTTCTTTTGATGTCGGGATACCATGAAAAAATTATTGGGAACCTCTGGCTTGACACTAAAGAAGTGTAGTTCTCACTCATGTAACAGTCCAATGTGGGTGTTCCTGGCTGGCGCCAGCTTCCCCCTACATGGTGATTAGGGATCCAGATCTTTCCATCTTGTGACTCTGTCATTCTCTAGTACCTCAGAGTTCTCTGCTTCCTGCCATCACAGATGGGAAAGAGAAGATGGAGAGGCACCTGCTTATGAAAGTCCAGGAAAAATATATAAAACCTCTACTCAATATTCCATCAGAGTGAACTAGTCACGTGATCTTTCCTGGACGTAAAGTGGGGTGGAAAATGTAATCCTGAAGGAGCAGCCACTTTCTGCCAAAACTTCGGGTTTATGGAAGGGGTGGGGGAATAGTCTCTGTGAACTATTTTACTCAACTAGCCACTGTTGGGAGACAATTCTCCATGCATCTCTCACATGTGTGCACATCTTGAGAGCAATACACTGACTGCTCTTTGTTCCAGATCATCTGTTCAAGGATGTTTGTATACTGAACAGACTTGGAAAACATAGTATCTCCCTCAGGAGCAAAGGGCAGGCATGCTCACTGCCAGTGCCTCTCAGCTCCAAAGCCACCCTTTTTGCCTGCTCGTGATAATGGAGCTGGGCTTTATAAATGATTCTCCTTCACTAGCTAGCAAAACGTGAAGCCTTATCAATGAAGAGTGCCAGAAGGACTGTAGAGGAGGAAGCCGGGGCTCTCTCCCTGTTTCTGGTTTGACTCACTCACCAGGCTCCCGAAAAACAGCTTTTCTCTGTTTCTTAGCCCCACATGGTTTCTCCAGTGCCGGGTTCCTGCAGAGCTCAGCTCCCTCCAGCATTTGGCCACTGCACACTGTCCAGTGCTTGACTCAGGAAGTGGCAGCACAGCCAGGAGCCCCAGACTGCGCAGGCCCATGCCTCAGCCCAGGGGAAGGCTGTTCGGTACTCCTCTCCTCAGCCCCATGCACAGCAAGGCCCCTGAAGAGCTGGTCATCTGGAGAGCTGGACACATCCCCTGAATCCCACACAGCTGGTCTGGAGCTGCCCAGGCCTGAACCACACACAGAGGTGCACTGCATGACAGAGAGGTGGCTTCTTAGCTGCTGCTGCCAGCAGCGCCCACTGGCTAACAGATTCCTTTGGCACCTAGTGAGTTCCAAGGCTTGTGACCTCCCCATGCATGACCTCCCAGCCACCCCAGAGAGCAGATTTCCAGCAAATATTGTCAAGGCATCTCTGCAACTTTGCTATCCAGTGACTAACGCCATGCTTTTTCCAGTGGTATTCAGATCTCAGCCTGGAGGGAAGAAGGTTATACGTTGGGTACTTGTCTCAGCCCTAGTACAGTAGTTGCTCTTTATAGACCTGCTATTTCTTTATTCTTTTTTTAATTTTATTATTATTATACTTTAAGTTTTAGGGTACATGTGCACAACGTGCAGGTTTGTTACATCTGTATACATGTGCCATGTTGGTGTGCTGCACCCATTAACTCGTCATTTAGCATTAGGTGTATCTCCTAATGCTATCCATCCCCCCTCCCCCCACCCCACAACAGTCCCCGGTGTGTGATGTTCCCCTTCCTGTGTCCATGCGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAACATGCGGTGTTTGGTTTCTTTATTCTTTAGAATTATTTTATTTTAAACTCTCACTAGCTGATTTTTCATGATTTTAATTGTTCATAATCCTTTATAGTACAACTTTCCCTGTTCAAATAATTATGTGGTTTCTGTCTCCTGCTTGTCCCTAAATAATACATTGCCCATTTTTTAAAAAAAATAGGTACCCTAAGATCAGGGCTCACCTCCTATAATGAAACCCACTGCATGTACATGTCTCAGTCTAGTCCTCTTTGAATTGCCCCATGGGAATTGAGGTTTGGAAAAACTGGTGCCAAAATGCTGATACCCTGGCTGCTGCCCCTGCTGTAAGTATTAAGCTGTACTTCACTCTAACCCAGAAGTTTTGTATCTTCTACCAGCATCCATGAAACTTTATTAGCCCAACTTGTTCACTTTGCAAGTTGGCTGATGTCAGACTCTTCATAGCTTTTGACAGCCATCTACGTCACACCTACCTTTTGAAATACTATGCAGTTACTAGAGATCAAGGCAGATCCTTAAAGACTTTCATAATATATCGTTAAATTAAAAATTACATTGCTAAATATTTTAACAGGATTCTATTTTGTTACAAAATCAGACAAATAAATGTTATAAATTAATATATTTTATTGATTGATGATATCGGTAAATTTGGGAGACTAAGAAGAAGACAATTTTAACTTAACGTGTTCTGTATTTTTTAAATTATTACAATGAGTTTGTATTGCTTTTTAATAAAAGGGAATACTGCAGTTTGGGGGTCTTAAGAACTGGTTATTCTACTAATGCAAGTACTTCAACAATTTTCCTATGCAG
Seq C2 exon
CCATCCCTGAATGTGCAGCCTTGCTCTGCCCAGAAAATTCCAGATGTTCGCCTTCCACTGAAGATGAAAACAAACTGGAATGCAAATGCCTTCCCAATTACCGAGGCGATGGCAAATACTGCGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011:ENST00000388887:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129472=EGF_3=WD(100=79.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains