HsaINT0160083 @ hg19
Intron Retention
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:18629]
Coordinates
chr12:104151948-104153051:+
Coord C1 exon
chr12:104151948-104152067
Coord A exon
chr12:104152068-104152910
Coord C2 exon
chr12:104152911-104153051
Length
843 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGTTTCTCCTTTTTTCTCAGACC
3' ss Score
10.1
Exon sequences
Seq C1 exon
GAAGTGCTGGCCTATTCCAACAGCTCAGCTCGAGGCCGTGCATTTCTAGAACACCTGACTGACCTGTCCATCCGCGGCACCCTCTTTGTGCCACAGAACAGTGGGCTGGGGGAGAATGAG
Seq A exon
GTGAGTTGAGTCCCTGGTGCCTTTGCTTTAGACTAGCATGTTATCTATCACCACAACAATGCTGTGTCACAAATTACCTGAAAACTCAGTGGCTACACATTTATTTAGCTCACAGATCATCTGCAGATCAGTTGGCCACTCCCTTGGTCTTGGCACACTCGGGTCTGAGACCAGCTGTCAGCTGCTCTAGCTGGGCCATCAATGGCTCTGCTCCATGGAACTCTCATCGTCCAACAGGCTAGCCCAGGCGAGTTCTCAGGGCAATGGCAGGGAGTGAGAGAGGCGAGAGTAGGCCCTGTCCCAACAGTGCTTTCTCAAGCCTCTGTTTGGTCACATTTGCTAATGTGCCCCTGGCCTGATAGGTCACATGACTGAGCCCAAAGTCAGCATGGGGGGCAAAGGGCCAGGGGTGCAGGGAGTGGGGAAGAACCAGGGCCACTGATGCAATCTGTGTTCCACACCAACCTTCTTCATATCACGGCACACAGAGGATTGGCGGTATTTATTCAATTCACGCACAGGTGGCTGACCTGAGGCTCCGACAGCCCCACCAGCCACCTGAGGGCTGAGGAAAGCAATACCTCTGCCTACCTCAAGACACCGCTGGAAAGCTCTGCTCTAGACAATACAAATGACATTCAATCCCCCATCCTAGCTATAGGTGGCCTCTGGCAGAGCCCAGACAACCAGAAGCCTAAGAAAACCTTGACATTTCCTGATCTCCACATGGAGGCAGGAAAGCCTAGGCCATGAGAAGCAATTTTCTTCGTCATCCCCATCATTAAAAAGACAAAATATTGCTTGGCCTTTGAAGAGCATTCTGTGTTTCTCCTTTTTTCTCAG
Seq C2 exon
ACCTTGTCTGGGCGGGACATCGAGCACCACCTCGCCAATGTCAGCATGTTTTTCTACAATGACCTTGTCAATGGCACCACCCTGCAAACGAGGCTGGGAAGCAAGCTGCTCATCACTGCCAGCCAGGACCCACTCCAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-STAB2:NM_017564:64
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(31.4=92.5)
A:
NA
C2:
PF0246917=Fasciclin=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTGGCCTATTCCAACAG
R:
GGAGTGGGTCCTGGCTGG
Band lengths:
254-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)