HsaINT0160251 @ hg19
Intron Retention
Gene
ENSG00000136738 | STAM
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:HGNC Symbol;Acc:11357]
Coordinates
chr10:17726831-17730172:+
Coord C1 exon
chr10:17726831-17726926
Coord A exon
chr10:17726927-17730025
Coord C2 exon
chr10:17730026-17730172
Length
3099 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTCTTTTTCTATTTTACAGGGT
3' ss Score
11.41
Exon sequences
Seq C1 exon
CTTCTAGGAGCATGTGTATCAAACTGTGGCAAAATTTTTCATTTAGAAGTATGTTCAAGAGATTTTGCTAGTGAAGTAAGCAACGTATTAAATAAG
Seq A exon
GTAAGGAGCATTATTTCCAGAAATTAATTAAGGCAGTCTTCTTTCTTCACATATTTTATTGTTTAAATCTTCACAGAGGACTATTCTGTGCTTTTTAAGAAATCCTTTCTAGGCTGTGTCTATCCAGTATATAAATAAATATTATGTTTTGTTGAAGAGACTGCGGATTCATGTAACTTTGAGTTAGTTTTTTCAAGCCATATTAGAGTGTTTTTAACCTGTTCTTTTCCATCATACTTTCATCTGATAAGAAAACAGGTATTTCTATATCTAATTAAATAATATCAGTCTATTTTACATACTGTTTTTGTAGGCACAAGGTATTTTCCTAATGGAAAACCTTTCAGAAACACTGCAAAAAGTCTATGGCACCGTTGAGTTTTTATCTTTATCAATAAGGCTGCTTCCTGGCCATCACAGGATTTTAATACTATACTGCTATTCTTACTGGCTGAACCCACAGCTGGAGTTGCCTCAAAAGTGGTGGCGGGGGAGTTTCCACAAGGGACTGCCCCAAACTGTTCCAGATAGGGCCAGATGAGAGTCCAAAAAAAGAGGCACTAAATGCCAGGGTGATCAGTCTAAAGGATTTATTAGGGGAACTTACACAGGAGGGCTGCAGTTTATAGGAGGGTTTAAGGAATTTGGCTCAGGGTTGGGGCTGGTTTCTGTGTGTTTAGCAACATACTTGATCTTTTAGTGTTTTGGGCCACAACCTGAACAACTTTATCAGTGCCTGAGAATGTTCAAGGCCCCAGTTTGGGTCCAAACCTATGGTGGAAAACATGCAGCTGGCTAGGTCACAGAGCGGGACAAGGCACTCTGTTTTTCTATTGGGACACAGAAAGAAAGCAGGGAGAACTGGGGACCCTACAACTGCCCACTCAACTGTAGAATTCTAGTCACACAGTTCAAGAAATTTTTCAATTTTCAATTAGTAATATGTGAGTTTCCCCAGTAAAAATTTGTGCATTCTAAAAGTAATTATTTTTGGCCTTTTTAGGGGGAGTACTGTAAATCAAGAAAAAGTTTTTGTATGTTAAAAGGGAAAATGCCTCATGTTTTTGGGAAAAATGAATAGTTCCAGGTTACAGTAGAAAAATAGCAGTATAGAAATATAGTAAGAATGTAAAATTCTGTACTTTTCGAACATCATGGTTAAATGATAATTCTTTCCCTTTCCTGCTTTATGCAGTTAATATTTATTTTCTACTAATTAATAAACATTGTCTTTTAATGTCCTGAATGTCCATCGAGATTACAACTGTTTATGAAGAGATTCTAATACCATGTTTTTTGTAATGTAGGTGAAAAATGTGGTATACTTACCTATGTATAATAGTGCAAGCAGCCATTTCCAAAAACGACTTCCTATAGGCAAGAGGACTTCTCTTTATTTTCTGAATGTTTTACAGTGAACATATTGGTTTTGTACTTAATAACATCCCGCCTTTTTTTTTTTTTTTTGAGACAGTGTCTCTCTTTGTCACCCAGGCTGGAGTACAGTGGCGTGATCTCAGCTGACTATAGCCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGAATACAGGCATGCGCCACCACGCCTGGCTGGTTTTTGTAGTGTTAGCAGAGATGGGGTTTCACCATGGGGATGGTCAGGCCAGTCTCGAACTCCTGACCTTGTGATTGCCCACCTCGGCCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCAGCCAACATCCTGCCCTTTTAAAAAATTTCCTTTTATTAAACAAATTAAGTTCATGTATAGTCTCAATAAAGCGTTTGCAAATCCATTATATGCTCCTTGACCAAAATACAGATTACATGTGCACTTAGAAAGAATTTTTTTTCTTCTAATAGAGTAATCTAAAAGTCTAACCTTCTCCATTTTTAAAAGCTTTAGCCAATTATTTAGTAAGCATTGGTTTGAAATACATTCATGACATTTCATAGAGGAGTTATTTCTTCTCTGGTATCTGTGAAGGTTTCTTTATATCTATTACATCAAATAGTAAGACTTCAAATTATTGCCGCTATGAAGATACATCAGTATTTTAATGAACTGGCCAGGTTTTTTCCCTTAATAAGCAATGAGTAAAATAATTTATTTTGAAAACTCACTACATTTATCTCTTTCTTTAATACGGAAGAATAATGCCCTGCACACCTGCCTTAGACTAACTTGAATCTTTGTTATACATCAACCATAAAGAGTTATGTTATTTTGGGCTGGGCACGGTGGCTCATGCCTGTAATCGCAGCACTTTGGGAGGCTGAGGCGGGCGAATCAGTTGGGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTAAAACCCCGCGTCTGCTAAAAGTACAAAAATTAGCTGGGCATGGTGGTGCGCGCCTGTAATCCTACTCGGGAGGTTGACACAAGAGAATCGCTTGAACCGCATCCCCCACCCCCCTCTGGGAGGCGGAGGTTGCAGTGTGCTGAGATCGAGCCACTGCAGTCCGGCTTCTGCCACAGGGTGAGACTCTGTCTCAAAAAACAAACCAAAAAAAAAGAAAAGAAAAGAAAGGAAAAAAAGTTATGTTATTTTGAAGAAATTAAATTTTCAAAATGATTAACATGCAGTGTACCTCAAACTAGGCCCCAGATAATTAAGCATCATGGAAAAAATGCATAGTCATGAACATTAAGAAGTCAGGAATTTGGAATAAAGGAACTGTATCATTTATTCTCTCCTTCCCACTTTTTTATTGCTTTGCAAAAAGCAGACACTTTTCCTTGTCTTACTGATGTACAAACCTTGCTTCGTTGCAAAATATTCTGAAAAGTCCTTTCAGATCTCCAAAATCTTATTACCTATTTAATGCTTTAATTTGAAGTGAGATATATATGATGGGTTTTTTCATAGTGTGAACATTAGTTTTATTTCGAATAACTATATTTTCTTGTCTATAGCTATGCATAACTTGTGATTCAAAAAACATCACTTAATAACTTTACTATTTAAAATGTCTGTATTAAATCATTGGCTAGGAAATTGGTGCTCTTTTATTTCTTTTTCTATTTTACAG
Seq C2 exon
GGTCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGATCCACAGCTTAGTCTAATATCAGCAATGATTAAGAACCTTAAGGAACAAGGAGTTACGTTCCCAGCTATTGGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136738-STAM:NM_003473:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(23.0=100)
A:
NA
C2:
PF0079014=VHS=PD(28.9=79.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)