HsaINT0161390 @ hg38
Intron Retention
Gene
ENSG00000136854 | STXBP1
Description
syntaxin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11444]
Coordinates
chr9:127678431-127680242:+
Coord C1 exon
chr9:127678431-127678532
Coord A exon
chr9:127678533-127680156
Coord C2 exon
chr9:127680157-127680242
Length
1624 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
TCTGTCTCTTTTCCTTCTAGGAC
3' ss Score
13.73
Exon sequences
Seq C1 exon
TCCACGCTGCGTCGCCGGAGCAAGCCGGAGCGGAAGGAACGCATCAGCGAGCAGACCTACCAGCTCTCACGGTGGACTCCGATTATCAAGGACATCATGGAG
Seq A exon
GTTAGTGCTGGGGCACAGGGAGGAAAAACCAGGCCCAGGGCCCTTGGCTTGTCAGCCTGGATGCTTCCAGCTTCACCTGCGGCGAGGTGCTGCTGACTTCACAGGTACTGCCTCCACTTGAGGATTTGCATCCAGGCCTCCTTCGGCCCTCATGGTGCCCCTTGCCTGGGGGTTTCTGAAGAGCTGAGAGACTGTGAAGCACAGCCCCAGATCTATTTGTTGTTATGTCTTGGAGGACTCAGCTCCTATAATAGAGACTCCTCTAGGGTGCCGCATCCAGAGGGGTCCAAGTGTATCTCAAAGGTCAGATGAGTGACATCACATCTCCACACAGGTGCAGTGGCTCAGCACACTTCCCCAGCACGGCCCTGCCTGCCCCGCCCTGCCCTCCTCCTGCTGTTCCCTACCTGAGCCTCCACACACCAGCAAATCGGATTCTGCTCCTCTGGCCAAAGCAGCCCCTTGCCTGGCATATTCTCACCCCTCCACTCCCCTTCCCAGATCCTGCTTTCCATCCAAGCCCCTCTTGAATCTTACCATTTCCATCTGCCGCCCCACCTGTCTGACCACTCAGCACACAGGGGCCTCCCCTGGACTCCTTAGTGCACATGTGCCTCTTGGTGCCTCGGGTCGCCTTTTTGTTTGTTGGTCCTGTCCCCTCAGCTGCTGTGTCATCTGCACAGAGCCTCTAGTGCAGCAGGTGTTTTTGCAGTTGTTGGCTGGAAGGTGTATAAGGTGGTGGCCACCGCAGTAGCCCTGTGGGGTCACTCCCTTCTCTCCTTGTAGCGGGAAGAGACCCTGCATAGAATCCTGCACCACTAGATCTTTCCAACTTGATTAGTGAACAAAACTGGGGTCTAGAGAATGAAGGGGTTTTTCTCGGGATCCCTTAGTTAATTCCTGGCAGCCCAGGTGTTCCTATTGAATTGTACATTAATATAAATGTATTTTAAATATATAGAGTGAGTCAGCTCCCATTTTTAAAATCCACAAACTAAAAGGATGGGTGAACATGAAACATCTAGAAACCAATTATATCTCTTTGCTTGTTGGGATAGCCAACCCCTCTGTCTCATTCCTTCCTTTGTTCTCTGCTCCCTTTTGCTCCCCCTCCTCTCCGATCCCCTAAAGAGACATGTGTAGGCTTCATGTGGGAGCTGTAAAGAAGAGTGTGGATTTCTAGGCAGCAGGAGGTAGATGGTGAGAGTCCACCCACCAGATAATTAGACACTTGAAAAACGGAGGGGGTAAGGCTTCTTCATGCAGGAGAGACACTGCTTGTGCCTGGTTTCTACAAGGCTGATGGCAAGTATCAGGAATTTATTGGACAGAATGCATCATTTATAAAACCTCACATAGATTATGAAAGTGAATAAACTGGAAGAGAAGCAAGAAAAAACTTCTCTTAAAAAGCAGGCTATCTCAGTGTAGCAGCTAGTTACAAAGCATCTGCTATAACTGAGCCCTGTGCTAGGCACCTCTGGCCGCAGGGAAGGGAGCTCTGGTTGTTGCAAACCTGGCCATGGCTTTGCCAAGTGACATGTTCTACAGATCATCTGGCCTTGGTTCCTATCAGCACTTTTCAGACAGATGGCAAGCTAATATCTGTCTCTTTTCCTTCTAG
Seq C2 exon
GACACTATTGAGGACAAACTTGACACCAAACACTACCCTTATATCTCTACCCGTTCCTCTGCCTCCTTCAGCACCACCGCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136854:ENST00000373302:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.377 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.9=100)
A:
NA
C2:
PF0099518=Sec1=FE(28.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains